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Gtsf1 gametocyte specific factor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 315347, updated on 9-Dec-2024

Summary

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Official Symbol
Gtsf1provided by RGD
Official Full Name
gametocyte specific factor 1provided by RGD
Primary source
RGD:1310791
See related
EnsemblRapid:ENSRNOG00000036831 AllianceGenome:RGD:1310791
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable tRNA binding activity. Predicted to be located in cytoplasm. Orthologous to human GTSF1 (gametocyte specific factor 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward (RPKM 555.1) See more
Orthologs
human mouse all
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Genomic context

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See Gtsf1 in Genome Data Viewer
Location:
7q36
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (136417793..136436849, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (134539329..134558395, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (145030139..145049183, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479585 Neighboring gene zinc finger protein 385A Neighboring gene integrin subunit alpha 5 Neighboring gene uncharacterized LOC102547836 Neighboring gene gametocyte specific factor 2 Neighboring gene NCK associated protein 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene expression pattern of Cue110: a member of the uncharacterized UPF0224 gene family preferentially expressed in germ cells. Yoshimura T, et al. Gene Expr Patterns, 2007 Dec. PMID 17919994
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC156809

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables tRNA binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in piRNA-mediated gene silencing by mRNA destabilization ISO
Inferred from Sequence Orthology
more info
  
involved_in secondary piRNA processing ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in piP-body ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
gametocyte-specific factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079707.2 → NP_001073175.1  gametocyte-specific factor 1

    See identical proteins and their annotated locations for NP_001073175.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    A0A8I6AM77, A0A9K3Y7D9, A1A5S0, F7FF05
    Related
    ENSRNOP00000052150.5, ENSRNOT00000055275.5
    Conserved Domains (1) summary
    pfam05253
    Location:15 → 38
    zf-U11-48K; U11-48K-like CHHC zinc finger

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    136417793..136436849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039079355.2 → XP_038935283.1  gametocyte-specific factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AM77
    Conserved Domains (1) summary
    pfam05253
    Location:15 → 38
    zf-U11-48K; U11-48K-like CHHC zinc finger

  2. XM_039079353.2 → XP_038935281.1  gametocyte-specific factor 1 isoform X1

    Conserved Domains (1) summary
    pfam05253
    Location:37 → 60
    zf-U11-48K; U11-48K-like CHHC zinc finger

  3. XM_039079354.2 → XP_038935282.1  gametocyte-specific factor 1 isoform X2

    Conserved Domains (1) summary
    pfam05253
    Location:34 → 57
    zf-U11-48K; U11-48K-like CHHC zinc finger

  4. XM_063263686.1 → XP_063119756.1  gametocyte-specific factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AM77
Nucleotide Protein Strain
Heading Accession and Version

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