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CG12728 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31526, updated on 28-Oct-2024

Summary

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Official Symbol
CG12728provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0029825
Locus tag
Dmel_CG12728
See related
AllianceGenome:FB:FBgn0029825
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG12728; XLF1; XRCC4
Orthologs
all
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Genomic context

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See CG12728 in Genome Data Viewer
Location:
5C10-5C10; 1-14 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (5942606..5945250)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5836639..5839283)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR44108 Neighboring gene Serine hydroxymethyl transferase Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. REC drives recombination to repair double-strand breaks in animal mtDNA. Klucnika A, et al. J Cell Biol, 2023 Jan 2. PMID 36355348, Free PMC Article
  2. DNA Repair in Drosophila: Mutagens, Models, and Missing Genes. Sekelsky J. Genetics, 2017 Feb. PMID 28154196, Free PMC Article
  3. Systems biology analysis of Drosophila in vivo screen data elucidates core networks for DNA damage repair in SCA1. Barclay SS, et al. Hum Mol Genet, 2014 Mar 1. PMID 24179173
  4. Effect of Larval Nutrition on Maternal mRNA Contribution to the Drosophila Egg. Crofton AE, et al. G3 (Bethesda), 2018 May 31. PMID 29666195, Free PMC Article
  5. Copper homeostasis gene discovery in Drosophila melanogaster. Norgate M, et al. Biometals, 2007 Jun. PMID 17216353

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG12728-PA
CG12728-PB
X-ray repair cross-complementing protein 4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    5942606..5945250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001297989.1 → NP_001284918.1  uncharacterized protein Dmel_CG12728, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001284918.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W455
    Conserved Domains (2) summary
    pfam09184
    Location:268 → 403
    PPP4R2; PPP4R2
    pfam09302
    Location:39 → 150
    XLF; XLF-Cernunnos, XRcc4-like factor, NHEJ component

  2. NM_132052.4 → NP_572280.2  uncharacterized protein Dmel_CG12728, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572280.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W455
    Related
    FBpp0070824
    Conserved Domains (2) summary
    pfam09184
    Location:268 → 403
    PPP4R2; PPP4R2
    pfam09302
    Location:39 → 150
    XLF; XLF-Cernunnos, XRcc4-like factor, NHEJ component
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W455 Q9W455

Gene LinkOut

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