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Zfp707 zinc finger protein 707 [ Rattus norvegicus (Norway rat) ]

Gene ID: 315088, updated on 27-Nov-2024

Summary

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Official Symbol
Zfp707provided by RGD
Official Full Name
zinc finger protein 707provided by RGD
Primary source
RGD:1311188
See related
EnsemblRapid:ENSRNOG00000057901 AllianceGenome:RGD:1311188
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311188
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human ZNF707 (zinc finger protein 707). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 110.7), Testes (RPKM 100.7) and 9 other tissues See more
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Genomic context

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See Zfp707 in Genome Data Viewer
Location:
7q34
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (109560298..109567256)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (107679597..107686556)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (117025917..117032875)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 623 Neighboring gene uncharacterized LOC120093815 Neighboring gene zinc finger protein 707-like 1 Neighboring gene coiled-coil domain containing 166 Neighboring gene mitogen-activated protein kinase 15 Neighboring gene family with sequence similarity 83, member H

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 707

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135897.1 → NP_001129369.1  zinc finger protein 707

    See identical proteins and their annotated locations for NP_001129369.1

    Status: PROVISIONAL

    Source sequence(s)
    BC162017
    UniProtKB/TrEMBL
    B1WC62
    Related
    ENSRNOP00000070689.3, ENSRNOT00000081286.3
    Conserved Domains (6) summary
    smart00349
    Location:40 → 100
    KRAB; krueppel associated box
    COG5048
    Location:249 → 385
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:281 → 301
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:279 → 301
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:40 → 76
    KRAB; KRAB box
    pfam13465
    Location:237 → 261
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    109560298..109567256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008765570.4 → XP_008763792.1  zinc finger protein 707 isoform X1

    UniProtKB/TrEMBL
    A0A0G2JYK3
    Conserved Domains (6) summary
    smart00349
    Location:39 → 99
    KRAB; krueppel associated box
    COG5048
    Location:248 → 384
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:280 → 300
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:278 → 300
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:39 → 75
    KRAB; KRAB box
    pfam13465
    Location:236 → 260
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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