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Rnf113a2 ring finger protein 113A2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 314313, updated on 27-Nov-2024

Summary

Official Symbol
Rnf113a2provided by RGD
Official Full Name
ring finger protein 113A2provided by RGD
Primary source
RGD:1303128
See related
EnsemblRapid:ENSRNOG00000067995 AllianceGenome:RGD:1303128
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf183
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See Rnf113a2 in Genome Data Viewer
Location:
6q31
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (109794794..109796075)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (104063677..104064958)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (108132254..108133535)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene FAM161 centrosomal protein B Neighboring gene coenzyme Q6 monooxygenase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5 Neighboring gene basal body orientation factor 1 Neighboring gene aldehyde dehydrogenase 6 family, member A1 Neighboring gene lin-52 DREAM MuvB core complex component

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in snoRNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of U2-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
zinc finger protein 183 (RING finger, C3HC4 type)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004445.2NP_001004445.1  zinc finger protein 183 (RING finger, C3HC4 type)

    Status: VALIDATED

    Source sequence(s)
    BC100134
    UniProtKB/TrEMBL
    A0A8I5ZN54, Q67ER1
    Related
    ENSRNOP00000079294.1, ENSRNOT00000097822.2
    Conserved Domains (3) summary
    COG5152
    Location:57323
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
    cd00162
    Location:261299
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00642
    Location:197223
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    109794794..109796075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)