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Alms1b Alstrom syndrome 1b [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31392, updated on 9-Dec-2024

Summary

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Official Symbol
Alms1bprovided by FlyBase
Official Full Name
Alstrom syndrome 1bprovided by FlyBase
Primary source
FLYBASE:FBgn0025387
Locus tag
Dmel_CG12184
See related
AllianceGenome:FB:FBgn0025387
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
alms1b; CG12184; Dmel\CG12184; EG:66A1.3; GH15731P
Summary
Colocalizes with ciliary basal body. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See Alms1b in Genome Data Viewer
Location:
4C10-4C10; 1-8 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (4627380..4630936, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (4521413..4524969, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR32773 Neighboring gene uncharacterized protein Neighboring gene pebbled Neighboring gene Alstrom syndrome 1a Neighboring gene partner of numb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. salto/CG13164 is required for sperm head morphogenesis in Drosophila. Augière C, et al. Mol Biol Cell, 2019 Mar 1. PMID 30601696, Free PMC Article
  2. Alstrom syndrome gene is a stem-cell-specific regulator of centriole duplication in the Drosophila testis. Chen C, et al. Elife, 2020 Sep 23. PMID 32965218, Free PMC Article
  3. Multiple mechanisms drive genomic adaptation to extreme O(2) levels in Drosophila melanogaster. Iranmehr A, et al. Nat Commun, 2021 Feb 12. PMID 33579965, Free PMC Article
  4. Chromosomal distribution of PcG proteins during Drosophila development. Nègre N, et al. PLoS Biol, 2006 Jun. PMID 16613483, Free PMC Article
  5. Evolution of alternative splicing in newly evolved genes of Drosophila. Zhan Z, et al. Gene, 2011 Jan 1. PMID 20851753

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
colocalizes_with ciliary basal body IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
alstrom syndrome 1b
Names
Alms1b-PA
Alms1b-PB
Alms1b-PC
CG12184-PA
CG12184-PB
CG12184-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    4627380..4630936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_131946.3 → NP_572174.3  alstrom syndrome 1b, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572174.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    O77274, Q9W4J0
    Conserved Domains (1) summary
    pfam15309
    Location:847 → 966
    ALMS_motif; ALMS motif

  2. NM_001272311.1 → NP_001259240.1  alstrom syndrome 1b, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259240.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PJ28, O77274
    Conserved Domains (1) summary
    pfam15309
    Location:847 → 959
    ALMS_motif; ALMS motif

  3. NM_001297935.1 → NP_001284864.1  alstrom syndrome 1b, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001284864.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O77274, Q961M4
    Conserved Domains (1) summary
    pfam15309
    Location:692 → 811
    ALMS_motif; ALMS motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PJ28 M9PJ28
O77274 O77274
Q961M4 Q961M4
Q9W4J0 Q9W4J0

Gene LinkOut

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