U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ccdc77 coiled-coil domain containing 77 [ Rattus norvegicus (Norway rat) ]

Gene ID: 312677, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
Ccdc77provided by RGD
Official Full Name
coiled-coil domain containing 77provided by RGD
Primary source
RGD:1310710
See related
EnsemblRapid:ENSRNOG00000037206 AllianceGenome:RGD:1310710
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310710
Summary
Predicted to be active in centrosome. Orthologous to human CCDC77 (coiled-coil domain containing 77). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 38.0), Thymus (RPKM 37.9) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ccdc77 in Genome Data Viewer
Location:
4q42
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (155206402..155238235, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (153534184..153566059, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (152860669..152892518, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486682 Neighboring gene transfer RNA leucine (anticodon AAG) 13 Neighboring gene lysine demethylase 5A Neighboring gene interleukin 17 receptor A Neighboring gene transmembrane protein 121B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. Jakobsen L, et al. EMBO J, 2011 Apr 20. PMID 21399614, Free PMC Article
  2. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in centrosome ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil domain-containing protein 77

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191752.1 → NP_001178681.1  coiled-coil domain-containing protein 77

    See identical proteins and their annotated locations for NP_001178681.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    155206402..155238235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063286115.1 → XP_063142185.1  coiled-coil domain-containing protein 77 isoform X2

    UniProtKB/TrEMBL
    D3ZHU5

  2. XM_006237236.5 → XP_006237298.1  coiled-coil domain-containing protein 77 isoform X1

    UniProtKB/TrEMBL
    A0A8I6GCW0, D3ZHU5
    Related
    ENSRNOP00000110643.1, ENSRNOT00000169059.1
    Conserved Domains (1) summary
    COG1196
    Location:180 → 518
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_063286118.1 → XP_063142188.1  coiled-coil domain-containing protein 77 isoform X5

    UniProtKB/TrEMBL
    D3ZHU5

  4. XM_006237244.5 → XP_006237306.1  coiled-coil domain-containing protein 77 isoform X5

    See identical proteins and their annotated locations for XP_006237306.1

    UniProtKB/TrEMBL
    D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:183 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. XM_006237238.4 → XP_006237300.1  coiled-coil domain-containing protein 77 isoform X3

    See identical proteins and their annotated locations for XP_006237300.1

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. XM_006237239.4 → XP_006237301.1  coiled-coil domain-containing protein 77 isoform X3

    See identical proteins and their annotated locations for XP_006237301.1

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Related
    ENSRNOP00000099446.1, ENSRNOT00000137052.1
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  7. XM_008763246.3 → XP_008761468.1  coiled-coil domain-containing protein 77 isoform X4

    UniProtKB/TrEMBL
    D3ZHU5
    Related
    ENSRNOP00000085428.2, ENSRNOT00000112339.2
    Conserved Domains (1) summary
    COG1196
    Location:100 → 438
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  8. XM_039107656.2 → XP_038963584.1  coiled-coil domain-containing protein 77 isoform X3

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Related
    ENSRNOP00000089671.2, ENSRNOT00000100367.2
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  9. XM_063286116.1 → XP_063142186.1  coiled-coil domain-containing protein 77 isoform X3

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5

  10. XM_063286117.1 → XP_063142187.1  coiled-coil domain-containing protein 77 isoform X3

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5

  11. XM_039107654.2 → XP_038963582.1  coiled-coil domain-containing protein 77 isoform X3

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Related
    ENSRNOP00000053046.3, ENSRNOT00000056200.4
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  12. XM_006237243.5 → XP_006237305.1  coiled-coil domain-containing protein 77 isoform X5

    See identical proteins and their annotated locations for XP_006237305.1

    UniProtKB/TrEMBL
    D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:183 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  13. XM_006237240.5 → XP_006237302.1  coiled-coil domain-containing protein 77 isoform X3

    See identical proteins and their annotated locations for XP_006237302.1

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  14. XM_039107653.2 → XP_038963581.1  coiled-coil domain-containing protein 77 isoform X3

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  15. XM_008763245.4 → XP_008761467.1  coiled-coil domain-containing protein 77 isoform X3

    See identical proteins and their annotated locations for XP_008761467.1

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  16. XM_039107655.2 → XP_038963583.1  coiled-coil domain-containing protein 77 isoform X3

    UniProtKB/TrEMBL
    A0A8I6GIA6, A6ILA2, D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:212 → 486
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  17. XM_039107659.2 → XP_038963587.1  coiled-coil domain-containing protein 77 isoform X5

    UniProtKB/TrEMBL
    D3ZHU5
    Conserved Domains (1) summary
    TIGR02168
    Location:183 → 452
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RNA

  1. XR_005503234.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools