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a6 a6 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31127, updated on 4-Jan-2025

Summary

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Official Symbol
a6provided by FlyBase
Official Full Name
a6provided by FlyBase
Primary source
FLYBASE:FBgn0023130
Locus tag
Dmel_CG3771
See related
AllianceGenome:FB:FBgn0023130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG3771; Dmel\CG3771; EG:9D2.3
Summary
Involved in embryonic development via the syncytial blastoderm. Is expressed in embryonic/larval midgut; larval muscle system; and organism. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

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Location:
2B7-2B7; 1-0.2 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (1693615..1695889, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (1587648..1589922, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene b6 Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Sarcoglycan delta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [Comparison of the molecular and genetic map of the 2B6-2B7-8 of Drosophila melanogaster X-chromosome]. Makunin IV, et al. Genetika, 1999 Aug. PMID 10546111
  2. From sequence to chromosome: the tip of the X chromosome of D. melanogaster. Benos PV, et al. Science, 2000 Mar 24. PMID 10731137
  3. Molecular characterization of the singed wings locus of Drosophila melanogaster. Schwartz YB, et al. BMC Genet, 2004 Jun 9. PMID 15189568, Free PMC Article
  4. A network model of the molecular organization of chromatin in Drosophila. van Bemmel JG, et al. Mol Cell, 2013 Feb 21. PMID 23438860
  5. From first base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. Benos PV, et al. Genome Res, 2001 May. PMID 11337470, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in embryonic development via the syncytial blastoderm IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
a6
Names
CG3771-PA
CG3771-PB
CG3771-PC
a6-PA
a6-PB
a6-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    1693615..1695889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001272213.1 → NP_001259142.1  a6, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259142.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O46341, Q9W564
    UniProtKB/TrEMBL
    M9PDH8
    Conserved Domains (1) summary
    pfam09727
    Location:29 → 78
    CortBP2; Cortactin-binding protein-2

  2. NM_057961.5 → NP_477309.1  a6, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_477309.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O46341, Q9W564
    UniProtKB/TrEMBL
    M9PDH8
    Related
    FBpp0070269
    Conserved Domains (1) summary
    pfam09727
    Location:29 → 78
    CortBP2; Cortactin-binding protein-2

  3. NM_001272212.1 → NP_001259141.1  a6, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259141.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O46341, Q9W564
    UniProtKB/TrEMBL
    M9PDH8
    Conserved Domains (1) summary
    pfam09727
    Location:29 → 78
    CortBP2; Cortactin-binding protein-2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PDH8 M9PDH8
O46341.1 O46341

Gene LinkOut

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