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Pcnx3 pecanex 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 309167, updated on 27-Nov-2024

Summary

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Official Symbol
Pcnx3provided by RGD
Official Full Name
pecanex 3provided by RGD
Primary source
RGD:1305529
See related
EnsemblRapid:ENSRNOG00000020742 AllianceGenome:RGD:1305529
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Pcnxl3
Summary
Predicted to be located in membrane. Orthologous to human PCNX3 (pecanex 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 101.3), Kidney (RPKM 97.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Pcnx3 in Genome Data Viewer
Location:
1q43
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (212380657..212402967, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (202951322..202974167, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (221019091..221041959, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene RELA proto-oncogene, NF-kB subunit Neighboring gene signal-induced proliferation-associated 1 Neighboring gene mitogen-activated protein kinase kinase kinase 11 Neighboring gene uncharacterized LOC102546344 Neighboring gene potassium two pore domain channel subfamily K member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. FMRP recruitment of β-catenin to the translation pre-initiation complex represses translation. Ehyai S, et al. EMBO Rep, 2018 Dec. PMID 30361391, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pecanex-like protein 3
Names
pecanex homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432284.1 → NP_001419213.1  pecanex-like protein 3 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  2. NM_001432287.1 → NP_001419216.1  pecanex-like protein 3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  3. NM_001432288.1 → NP_001419217.1  pecanex-like protein 3 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    212380657..212402967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279860.1 → XP_063135930.1  pecanex-like protein 3 isoform X5

  2. XM_063279866.1 → XP_063135936.1  pecanex-like protein 3 isoform X7

    Related
    ENSRNOP00000109557.1, ENSRNOT00000168853.1

  3. XM_006230948.5 → XP_006231010.1  pecanex-like protein 3 isoform X2

    See identical proteins and their annotated locations for XP_006231010.1

    UniProtKB/TrEMBL
    A0A8I6AU25
    Related
    ENSRNOP00000106094.1, ENSRNOT00000136741.1
    Conserved Domains (2) summary
    pfam05041
    Location:1582 → 1807
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419 → 626
    Relaxase; Relaxase/Mobilization nuclease domain

  4. XM_006230952.5 → XP_006231014.1  pecanex-like protein 3 isoform X9

    See identical proteins and their annotated locations for XP_006231014.1

    UniProtKB/TrEMBL
    A0A8I6AU25
    Conserved Domains (2) summary
    pfam05041
    Location:1560 → 1785
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419 → 622
    Relaxase; Relaxase/Mobilization nuclease domain

  5. XM_039094892.2 → XP_038950820.1  pecanex-like protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A8I6AU25

  6. XM_006230950.5 → XP_006231012.1  pecanex-like protein 3 isoform X4

    See identical proteins and their annotated locations for XP_006231012.1

    UniProtKB/TrEMBL
    A0A8I6AU25
    Conserved Domains (2) summary
    pfam05041
    Location:1573 → 1798
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419 → 622
    Relaxase; Relaxase/Mobilization nuclease domain

  7. XM_219515.11 → XP_219515.4  pecanex-like protein 3 isoform X6

    Related
    ENSRNOP00000095745.1, ENSRNOT00000097729.2
    Conserved Domains (2) summary
    pfam05041
    Location:1570 → 1795
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419 → 622
    Relaxase; Relaxase/Mobilization nuclease domain

  8. XM_039094887.2 → XP_038950815.1  pecanex-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AU25
    Conserved Domains (2) summary
    PHA03247
    Location:201 → 655
    PHA03247; large tegument protein UL36; Provisional
    pfam05041
    Location:1577 → 1803
    Pecanex_C; Pecanex protein (C-terminus)

  9. XM_006230947.5 → XP_006231009.1  pecanex-like protein 3 isoform X1

    See identical proteins and their annotated locations for XP_006231009.1

    UniProtKB/TrEMBL
    A0A8I6AU25, D3ZSQ1
    Related
    ENSRNOP00000059738.2, ENSRNOT00000064136.5
    Conserved Domains (2) summary
    pfam05041
    Location:1583 → 1808
    Pecanex_C; Pecanex protein (C-terminus)
    cl21589
    Location:419 → 622
    Relaxase; Relaxase/Mobilization nuclease domain
Nucleotide Protein Strain
Heading Accession and Version

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