U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Vsig10l V-set and immunoglobulin domain containing 10 like [ Rattus norvegicus (Norway rat) ]

Gene ID: 308556, updated on 27-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Vsig10lprovided by RGD
Official Full Name
V-set and immunoglobulin domain containing 10 likeprovided by RGD
Primary source
RGD:1564982
See related
EnsemblRapid:ENSRNOG00000023411 AllianceGenome:RGD:1564982
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564982
Summary
Predicted to be located in nucleoplasm. Orthologous to human VSIG10L (V-set and immunoglobulin domain containing 10 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 35.2), Heart (RPKM 29.0) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Vsig10l in Genome Data Viewer
Location:
1q22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (103007933..103016161)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (93871487..93880157)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (98458691..98467444, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene claudin domain containing 2 Neighboring gene electron transfer flavoprotein subunit beta Neighboring gene uncharacterized LOC120099799 Neighboring gene IgLON family member 5 Neighboring gene uncharacterized LOC130062809

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

Go to the top of the page Help
Preferred Names
V-set and immunoglobulin domain-containing protein 10-like
Names
ZV-set and immunoglobulin domain containing 10 like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432229.1 → NP_001419158.1  V-set and immunoglobulin domain-containing protein 10-like isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    F1M5N2

  2. NM_001432230.1 → NP_001419159.1  V-set and immunoglobulin domain-containing protein 10-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  3. NM_001432231.1 → NP_001419160.1  V-set and immunoglobulin domain-containing protein 10-like isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    103007933..103016161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_218633.11 → XP_218633.4  V-set and immunoglobulin domain-containing protein 10-like isoform X2

    Related
    ENSRNOP00000035308.7, ENSRNOT00000039446.8
    Conserved Domains (5) summary
    cd00096
    Location:318 → 387
    Ig; Immunoglobulin domain
    smart00410
    Location:411 → 488
    IG_like; Immunoglobulin like
    pfam07679
    Location:599 → 651
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:400 → 488
    Ig_2; Immunoglobulin domain
    cl11960
    Location:223 → 296
    Ig; Immunoglobulin domain

  2. XM_063280939.1 → XP_063137009.1  V-set and immunoglobulin domain-containing protein 10-like isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.