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Ankrd28 ankyrin repeat domain 28 [ Rattus norvegicus (Norway rat) ]

Gene ID: 306264, updated on 27-Nov-2024

Summary

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Symbol
Ankrd28provided by RGD
Full Name
ankyrin repeat domain 28provided by RGD
Primary source
RGD:1559931
See related
EnsemblRapid:ENSRNOG00000019697 AllianceGenome:RGD:1559931
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559931
Summary
Orthologous to human ANKRD28 (ankyrin repeat domain 28). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 112.0), Heart (RPKM 101.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ankrd28 in Genome Data Viewer
Location:
16p16
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (6924868..7056593, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (6918487..7050244, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (7816876..7879023, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene 2-hydroxyacyl-CoA lyase 1 Neighboring gene biotinidase Neighboring gene mitochondrial ribosomal protein L37, pseudogene 1 Neighboring gene uncharacterized LOC120097394 Neighboring gene uncharacterized LOC102550037 Neighboring gene uncharacterized LOC134482451

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Names
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427331.1 → NP_001414260.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    UniProtKB/TrEMBL
    A0A8I5ZRD0
    Related
    ENSRNOP00000081029.1, ENSRNOT00000112368.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    6924868..7056593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039094981.2 → XP_038950909.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

    UniProtKB/TrEMBL
    A0A8I5Y6T8
    Related
    ENSRNOP00000111956.1, ENSRNOT00000142077.1
    Conserved Domains (6) summary
    PHA02874
    Location:498 → 807
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:130 → 398
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:84 → 114
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:871 → 901
    Ank; Ankyrin repeat
    pfam12796
    Location:771 → 864
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:29 → 245
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_039094979.2 → XP_038950907.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X2

    UniProtKB/TrEMBL
    F1M400
    Related
    ENSRNOP00000078059.2, ENSRNOT00000098800.2
    Conserved Domains (6) summary
    PHA02874
    Location:546 → 855
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:14 → 302
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:132 → 162
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:919 → 949
    Ank; Ankyrin repeat
    pfam12796
    Location:819 → 912
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:922 → 998
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_063275354.1 → XP_063131424.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

    UniProtKB/TrEMBL
    A0A8I5Y6T8

  4. XM_039094983.2 → XP_038950911.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

    UniProtKB/TrEMBL
    A0A8I5Y6T8
    Conserved Domains (6) summary
    PHA02874
    Location:498 → 807
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:130 → 398
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:84 → 114
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:871 → 901
    Ank; Ankyrin repeat
    pfam12796
    Location:771 → 864
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:29 → 245
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_039094977.2 → XP_038950905.2  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X1

    UniProtKB/TrEMBL
    A0A8I6GHK6

  6. XM_039094980.2 → XP_038950908.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X3

    UniProtKB/TrEMBL
    A0A8I5Y6T8
    Conserved Domains (6) summary
    PHA02874
    Location:498 → 807
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:130 → 398
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:84 → 114
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:871 → 901
    Ank; Ankyrin repeat
    pfam12796
    Location:771 → 864
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:29 → 245
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_039094984.2 → XP_038950912.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform X4

    Conserved Domains (3) summary
    PHA03095
    Location:63 → 343
    PHA03095; ankyrin-like protein; Provisional
    COG0666
    Location:268 → 447
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:356 → 388
    ANK; ANK repeat [structural motif]

RNA

  1. XR_005494817.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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