U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Glt8d1 glycosyltransferase 8 domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 306253, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
Glt8d1provided by RGD
Official Full Name
glycosyltransferase 8 domain containing 1provided by RGD
Primary source
RGD:1359293
See related
EnsemblRapid:ENSRNOG00000018179 AllianceGenome:RGD:1359293
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Da2-24
Summary
Predicted to enable UDP-glycosyltransferase activity. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D1 (glycosyltransferase 8 domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 148.6), Lung (RPKM 123.5) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Glt8d1 in Genome Data Viewer
Location:
16p16
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (6198152..6213671)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (6192269..6207227)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (7082450..7097405)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene inter-alpha trypsin inhibitor, heavy chain 3 Neighboring gene inter-alpha trypsin inhibitor, heavy chain 1 Neighboring gene NIMA-related kinase 4 Neighboring gene signal peptidase complex subunit 1 Neighboring gene small nucleolar RNA SNORD19B Neighboring gene small nucleolar RNA, C/D box 69 Neighboring gene G protein nucleolar 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC94018

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
glycosyltransferase 8 domain-containing protein 1
Names
glycosyltransferase AD-017
NP_001007684.1
XP_063131363.1
XP_063131364.1
XP_063131365.1
XP_063131366.1
XP_063131367.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007683.1 → NP_001007684.1  glycosyltransferase 8 domain-containing protein 1

    See identical proteins and their annotated locations for NP_001007684.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079066
    UniProtKB/Swiss-Prot
    Q6AYF6
    UniProtKB/TrEMBL
    A0A8L2Q662, A6KG13
    Conserved Domains (1) summary
    cd06429
    Location:66 → 351
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    6198152..6213671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063275294.1 → XP_063131364.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6AYF6
    UniProtKB/TrEMBL
    A0A8L2Q662, A6KG13
    Related
    ENSRNOP00000013291.6, ENSRNOT00000013291.8

  2. XM_063275293.1 → XP_063131363.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6AYF6
    UniProtKB/TrEMBL
    A0A8L2Q662, A6KG13

  3. XM_063275297.1 → XP_063131367.1  glycosyltransferase 8 domain-containing protein 1 isoform X3

  4. XM_063275295.1 → XP_063131365.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6AYF6
    UniProtKB/TrEMBL
    A0A8L2Q662, A6KG13

  5. XM_063275296.1 → XP_063131366.1  glycosyltransferase 8 domain-containing protein 1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AYF6.1 GenPept UniProtKB/Swiss-Prot:Q6AYF6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools