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Fhip2b FHF complex subunit HOOK interacting protein 2B [ Rattus norvegicus (Norway rat) ]

Gene ID: 306015, updated on 4-Jan-2025

Summary

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Official Symbol
Fhip2bprovided by RGD
Official Full Name
FHF complex subunit HOOK interacting protein 2Bprovided by RGD
Primary source
RGD:1308870
See related
EnsemblRapid:ENSRNOG00000012014 AllianceGenome:RGD:1308870
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Rai16; Fam160b2
Summary
Orthologous to human FHIP2B (FHF complex subunit HOOK interacting protein 2B). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Muscle (RPKM 138.9), Heart (RPKM 96.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fhip2b in Genome Data Viewer
Location:
15p11
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (52066341..52084296, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (45656641..45674603, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (52271495..52288938, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene HR upstream open reading frame Neighboring gene HR, lysine demethylase and nuclear receptor corepressor Neighboring gene nudix hydrolase 18 Neighboring gene dematin actin binding protein Neighboring gene fibroblast growth factor 17 Neighboring gene nucleophosmin/nucleoplasmin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC188555

General protein information

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Preferred Names
FHF complex subunit HOOK-interacting protein 2B
Names
family with sequence similarity 160, member B2
retinoic acid induced 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170474.2 → NP_001163945.1  FHF complex subunit HOOK-interacting protein 2B

    See identical proteins and their annotated locations for NP_001163945.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/TrEMBL
    B5DEJ2, F7FI79
    Related
    ENSRNOP00000016209.7, ENSRNOT00000016209.7
    Conserved Domains (1) summary
    pfam10257
    Location:79 → 477
    RAI16-like; Retinoic acid induced 16-like protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    52066341..52084296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017599704.3 → XP_017455193.1  FHF complex subunit HOOK-interacting protein 2B isoform X1

    UniProtKB/TrEMBL
    F7FI79
    Related
    ENSRNOP00000082834.2, ENSRNOT00000107402.2

  2. XM_039093355.2 → XP_038949283.1  FHF complex subunit HOOK-interacting protein 2B isoform X3

    UniProtKB/TrEMBL
    A0A8I6AHJ2
    Conserved Domains (1) summary
    pfam10257
    Location:10 → 387
    RAI16-like; Retinoic acid induced 16-like protein

  3. XM_039093353.2 → XP_038949281.1  FHF complex subunit HOOK-interacting protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A8I6AHJ2
    Conserved Domains (1) summary
    pfam10257
    Location:21 → 419
    RAI16-like; Retinoic acid induced 16-like protein

  4. XM_039093354.2 → XP_038949282.1  FHF complex subunit HOOK-interacting protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A8I6AHJ2
    Conserved Domains (1) summary
    pfam10257
    Location:21 → 419
    RAI16-like; Retinoic acid induced 16-like protein

  5. XM_039093356.2 → XP_038949284.1  FHF complex subunit HOOK-interacting protein 2B isoform X4

    Conserved Domains (1) summary
    pfam10257
    Location:79 → 477
    RAI16-like; Retinoic acid induced 16-like protein

RNA

  1. XR_005493730.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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