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Fam193a family with sequence similarity 193, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 305452, updated on 27-Nov-2024

Summary

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Symbol
Fam193aprovided by RGD
Full Name
family with sequence similarity 193, member Aprovided by RGD
Primary source
RGD:1309634
See related
EnsemblRapid:ENSRNOG00000013832 AllianceGenome:RGD:1309634
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309634
Summary
Orthologous to human FAM193A (family with sequence similarity 193 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 142.7), Spleen (RPKM 114.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fam193a in Genome Data Viewer
Location:
14q21
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (80480742..80607086, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (76250103..76382525, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (81515897..81638919, complement)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene SH3-domain binding protein 2 Neighboring gene U1 spliceosomal RNA Neighboring gene TNFAIP3 interacting protein 2 Neighboring gene U6 snRNA-associated Sm-like protein LSm3 Neighboring gene small nucleolar RNA U13 Neighboring gene cilia and flagella associated protein 99 Neighboring gene uncharacterized LOC103693090 Neighboring gene ring finger protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
protein FAM193A
Names
protein FAM193A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427458.1 → NP_001414387.1  protein FAM193A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    A0A8I6GBK1
    Related
    ENSRNOP00000084188.1, ENSRNOT00000115786.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    80480742..80607086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063273154.1 → XP_063129224.1  protein FAM193A isoform X2

    UniProtKB/TrEMBL
    A0A8I6APE8
    Related
    ENSRNOP00000095571.1, ENSRNOT00000097212.2

  2. XM_223536.10 → XP_223536.5  protein FAM193A isoform X1

    See identical proteins and their annotated locations for XP_223536.5

    UniProtKB/TrEMBL
    A6IK31, D3ZIG8
    Conserved Domains (3) summary
    pfam11679
    Location:860 → 940
    DUF3275; Protein of unknown function (DUF3275)
    pfam13863
    Location:1023 → 1098
    DUF4200; Domain of unknown function (DUF4200)
    pfam15914
    Location:1380 → 1433
    FAM193_C; FAM193 family C-terminal

  3. XM_039092826.2 → XP_038948754.1  protein FAM193A isoform X3

    Conserved Domains (1) summary
    PRK14950
    Location:950 → 1056
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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