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Glt1d1 glycosyltransferase 1 domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 304445, updated on 4-Jan-2025

Summary

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Official Symbol
Glt1d1provided by RGD
Official Full Name
glycosyltransferase 1 domain containing 1provided by RGD
Primary source
RGD:1304896
See related
EnsemblRapid:ENSRNOG00000000961 AllianceGenome:RGD:1304896
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1304896
Summary
Predicted to enable glycosyltransferase activity. Predicted to be located in cytosol. Orthologous to human GLT1D1 (glycosyltransferase 1 domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 145.9), Brain (RPKM 64.0) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Glt1d1 in Genome Data Viewer
Location:
12q14
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (34611942..34685591, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (28975984..29049707, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (32666664..32749617, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095943 Neighboring gene transmembrane protein 132D Neighboring gene uncharacterized LOC134481288 Neighboring gene uncharacterized LOC134481183 Neighboring gene solute carrier family 15 member 4 Neighboring gene uncharacterized LOC108352443 Neighboring gene transmembrane protein 132C Neighboring gene transmembrane protein 254, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
glycosyltransferase 1 domain-containing protein 1
XP_038946031.1
XP_222147.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431732.1 → NP_001418661.1  glycosyltransferase 1 domain-containing protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012
    UniProtKB/TrEMBL
    A0A8I6GMK0, D3ZUX2

  2. NM_001431733.1 → NP_001418662.1  glycosyltransferase 1 domain-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000012

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    34611942..34685591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_222147.11 → XP_222147.4  glycosyltransferase 1 domain-containing protein 1 isoform X1

    Related
    ENSRNOP00000063482.1, ENSRNOT00000064526.6
    Conserved Domains (2) summary
    COG0438
    Location:58 → 340
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cl10013
    Location:67 → 328
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

  2. XM_039090103.2 → XP_038946031.1  glycosyltransferase 1 domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cd03801
    Location:12 → 238
    GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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