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C10h5orf15 similar to human chromosome 5 open reading frame 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 303122, updated on 4-Jan-2025

Summary

Official Symbol
C10h5orf15provided by RGD
Official Full Name
similar to human chromosome 5 open reading frame 15provided by RGD
Primary source
RGD:1310352
See related
EnsemblRapid:ENSRNOG00000006148 AllianceGenome:RGD:1310352
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310352
Summary
Orthologous to human C5orf15 (chromosome 5 open reading frame 15). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Kidney (RPKM 575.9), Liver (RPKM 377.0) and 9 other tissues See more
Orthologs
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Genomic context

See C10h5orf15 in Genome Data Viewer
Location:
10q22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (37064889..37077493)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (36563989..36576593)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (37757131..37769781)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene transcription factor 7 Neighboring gene voltage-dependent anion channel 1 Neighboring gene cytochrome b-c1 complex subunit 10-like Neighboring gene uncharacterized LOC102548512 Neighboring gene ribosomal protein S9, pseudogene 12

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
keratinocyte-associated transmembrane protein 2
Names
keratinocytes associated transmembrane protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106999.2NP_001100469.1  keratinocyte-associated transmembrane protein 2 precursor

    See identical proteins and their annotated locations for NP_001100469.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A6HEB0, D3ZQ77
    Related
    ENSRNOP00000008119.6, ENSRNOT00000008119.8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    37064889..37077493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)