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calr3a calreticulin 3a [ Danio rerio (zebrafish) ]

Gene ID: 30248, updated on 9-Dec-2024

Summary

Official Symbol
calr3aprovided by ZNC
Official Full Name
calreticulin 3aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-000208-17
See related
Ensembl:ENSDARG00000103979 AllianceGenome:ZFIN:ZDB-GENE-000208-17
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
calr; zgc:85636
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in ERAD pathway and protein folding. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; periderm; and polster. Orthologous to human CALR3 (calreticulin 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See calr3a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (4762478..4769054, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (4378103..4384679, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene RAD23 homolog A, nucleotide excision repair protein b Neighboring gene LOC100332737 Neighboring gene novel protein with Immunoglobulin V-set domains

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in ERAD pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein folding IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within protein folding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum lumen IEA
Inferred from Electronic Annotation
more info
 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131047.2NP_571122.2  calreticulin 3a precursor

    Status: VALIDATED

    Source sequence(s)
    CR751224, CU570881
    UniProtKB/TrEMBL
    A0A8M1PB70, Q6PE26
    Related
    ENSDARP00000130666.1, ENSDART00000165235.2
    Conserved Domains (1) summary
    pfam00262
    Location:23332
    Calreticulin; Calreticulin family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    4762478..4769054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)