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drl draculin [ Danio rerio (zebrafish) ]

Gene ID: 30167, updated on 9-Dec-2024

Summary

Official Symbol
drlprovided by ZNC
Official Full Name
draculinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-991213-3
See related
Ensembl:ENSDARG00000078004 AllianceGenome:ZFIN:ZDB-GENE-991213-3
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
dra; cb253; zgc:109857; zgc:136538
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and zinc ion binding activity. Acts upstream of or within gastrulation with mouth forming second. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; hematopoietic cell; hematopoietic system; hypoblast; and mesoderm. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See drl in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (61645156..61652253, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (60960435..60967503, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene draculin-like, tandem duplicate 2 Neighboring gene draculin-like, tandem duplicate 1 Neighboring gene adaptor related protein complex 2 subunit beta 1 Neighboring gene ras-like protein family member 10B

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding NAS
Non-traceable Author Statement
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within gastrulation with mouth forming second IEP
Inferred from Expression Pattern
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
zinc finger protein draculin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_130977.2NP_571052.2  zinc finger protein draculin

    Status: VALIDATED

    Source sequence(s)
    AL935280
    UniProtKB/Swiss-Prot
    B0R153, Q504H6, Q9W747
    Related
    ENSDARP00000088134.3, ENSDART00000097364.4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    61645156..61652253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)