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Cracdl CRACD like [ Rattus norvegicus (Norway rat) ]

Gene ID: 301351, updated on 27-Nov-2024

Summary

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Official Symbol
Cracdlprovided by RGD
Official Full Name
CRACD likeprovided by RGD
Primary source
RGD:1310819
See related
EnsemblRapid:ENSRNOG00000018366 AllianceGenome:RGD:1310819
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310819
Summary
Orthologous to human CRACDL (CRACD like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 81.0), Lung (RPKM 42.5) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cracdl in Genome Data Viewer
Location:
9q21
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (47323785..47446612, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (39834321..39950763, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (44194348..44309816, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094669 Neighboring gene cytochrome C oxidase assembly factor 5 Neighboring gene unc-50 inner nuclear membrane RNA binding protein Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A Neighboring gene uncharacterized LOC134480567 Neighboring gene U2 spliceosomal RNA Neighboring gene testis specific 10 Neighboring gene chromosome 9 C2orf15 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
CRACD like; CRACD-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001428724.1 → NP_001415653.1  CRACD like isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A0A8I6ARE4

  2. NM_001428725.1 → NP_001415654.1  CRACD like isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A0A8I6ARE4

  3. NM_001428726.1 → NP_001415655.1  CRACD like isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    47323785..47446612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063268117.1 → XP_063124187.1  CRACD-like protein isoform X6

  2. XM_008767055.4 → XP_008765277.2  CRACD-like protein isoform X5

    Conserved Domains (1) summary
    pfam15262
    Location:144 → 242
    DUF4592; Domain of unknown function (DUF4592)

  3. XM_039084538.2 → XP_038940466.1  CRACD-like protein isoform X3

    Related
    ENSRNOP00000097364.2, ENSRNOT00000102615.2
    Conserved Domains (3) summary
    PTZ00436
    Location:467 → 601
    PTZ00436; 60S ribosomal protein L19-like protein; Provisional
    PHA03247
    Location:523 → 1040
    PHA03247; large tegument protein UL36; Provisional
    pfam15262
    Location:166 → 264
    DUF4592; Domain of unknown function (DUF4592)

  4. XM_006244861.5 → XP_006244923.2  CRACD-like protein isoform X2

    Conserved Domains (1) summary
    pfam15262
    Location:172 → 270
    DUF4592; Domain of unknown function (DUF4592)

  5. XM_006244862.5 → XP_006244924.1  CRACD-like protein isoform X1

    Related
    ENSRNOP00000097029.1, ENSRNOT00000118166.2
    Conserved Domains (1) summary
    pfam15262
    Location:172 → 270
    DUF4592; Domain of unknown function (DUF4592)

  6. XM_006244864.5 → XP_006244926.1  CRACD-like protein isoform X4

    Related
    ENSRNOP00000062387.4, ENSRNOT00000068496.6
    Conserved Domains (1) summary
    pfam15262
    Location:164 → 262
    DUF4592; Domain of unknown function (DUF4592)
Nucleotide Protein Strain
Heading Accession and Version

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