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Atosb atos homolog B [ Rattus norvegicus (Norway rat) ]

Gene ID: 298201, updated on 27-Nov-2024

Summary

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Official Symbol
Atosbprovided by RGD
Official Full Name
atos homolog Bprovided by RGD
Primary source
RGD:1311249
See related
EnsemblRapid:ENSRNOG00000009323 AllianceGenome:RGD:1311249
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam214b; RGD1311249
Summary
Predicted to be located in nucleus. Orthologous to human ATOSB (atos homolog B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Spleen (RPKM 99.5), Testes (RPKM 76.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Atosb in Genome Data Viewer
Location:
5q22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (62056654..62070338, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (57260839..57274524, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (58477894..58484900, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene FA complementation group G Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class O Neighboring gene stomatin like 2 Neighboring gene unc-13 homolog B Neighboring gene ribosomal protein L39, pseudogene 2 Neighboring gene thymosin beta 4, X-linked like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
atos homolog protein B
Names
family with sequence similarity 214, member B
protein FAM214B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013931.2 → NP_001013953.1  atos homolog protein B

    See identical proteins and their annotated locations for NP_001013953.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A0A8L2Q5T7, A6IJ03
    Related
    ENSRNOP00000012386.5, ENSRNOT00000012386.7
    Conserved Domains (2) summary
    pfam13889
    Location:480 → 536
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:348 → 405
    DUF4210; Domain of unknown function (DUF4210)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    62056654..62070338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039109526.1 → XP_038965454.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A0A8L2Q5T7, A6IJ03
    Conserved Domains (2) summary
    pfam13889
    Location:480 → 536
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:348 → 405
    DUF4210; Domain of unknown function (DUF4210)

  2. XM_063287373.1 → XP_063143443.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A6IJ03

  3. XM_039109527.2 → XP_038965455.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A0A8L2Q5T7, A6IJ03
    Conserved Domains (2) summary
    pfam13889
    Location:480 → 536
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:348 → 405
    DUF4210; Domain of unknown function (DUF4210)

  4. XM_063287375.1 → XP_063143445.1  atos homolog protein B isoform X2

  5. XM_063287371.1 → XP_063143441.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A6IJ03

  6. XM_063287374.1 → XP_063143444.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A6IJ03

  7. XM_039109528.2 → XP_038965456.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A0A8L2Q5T7, A6IJ03
    Conserved Domains (2) summary
    pfam13889
    Location:480 → 536
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:348 → 405
    DUF4210; Domain of unknown function (DUF4210)

  8. XM_039109530.1 → XP_038965458.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A0A8L2Q5T7, A6IJ03
    Conserved Domains (2) summary
    pfam13889
    Location:480 → 536
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:348 → 405
    DUF4210; Domain of unknown function (DUF4210)

  9. XM_039109531.1 → XP_038965459.1  atos homolog protein B isoform X2

    UniProtKB/TrEMBL
    A0A8L2Q5T7
    Conserved Domains (2) summary
    pfam13889
    Location:479 → 535
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:347 → 404
    DUF4210; Domain of unknown function (DUF4210)

  10. XM_039109529.1 → XP_038965457.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A0A8L2Q5T7, A6IJ03
    Conserved Domains (2) summary
    pfam13889
    Location:480 → 536
    Chromosome_seg; Chromosome segregation during meiosis
    pfam13915
    Location:348 → 405
    DUF4210; Domain of unknown function (DUF4210)

  11. XM_063287372.1 → XP_063143442.1  atos homolog protein B isoform X1

    UniProtKB/Swiss-Prot
    Q5PQM8
    UniProtKB/TrEMBL
    A6IJ03
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PQM8.1 GenPept UniProtKB/Swiss-Prot:Q5PQM8

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