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Zfp362 zinc finger protein 362 [ Rattus norvegicus (Norway rat) ]

Gene ID: 297879, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp362provided by RGD
Official Full Name
zinc finger protein 362provided by RGD
Primary source
RGD:1306498
See related
EnsemblRapid:ENSRNOG00000043364 AllianceGenome:RGD:1306498
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306498
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF362 (zinc finger protein 362). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 45.4), Adrenal (RPKM 34.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp362 in Genome Data Viewer
Location:
5q36
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (146403469..146437707, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141119073..141153304, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (146951195..146985450, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene polyhomeotic homolog 2 Neighboring gene alpha 1,3-galactosyltransferase 2 Neighboring gene uncharacterized LOC102551009 Neighboring gene uncharacterized LOC120102984

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 362

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191612.1 → NP_001178541.1  zinc finger protein 362

    See identical proteins and their annotated locations for NP_001178541.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A8I5ZWA1, A6ISG0, D4A633
    Related
    ENSRNOP00000007761.5, ENSRNOT00000007761.9
    Conserved Domains (5) summary
    COG5189
    Location:305 → 357
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    PRK14971
    Location:27 → 131
    PRK14971; DNA polymerase III subunit gamma/tau
    sd00017
    Location:255 → 275
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:253 → 275
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:267 → 292
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    146403469..146437707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006238922.4 → XP_006238984.1  zinc finger protein 362 isoform X1

    See identical proteins and their annotated locations for XP_006238984.1

    UniProtKB/TrEMBL
    A0A8I5ZWA1, A6ISG0, D4A633
    Conserved Domains (5) summary
    COG5189
    Location:305 → 357
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    PRK14971
    Location:27 → 131
    PRK14971; DNA polymerase III subunit gamma/tau
    sd00017
    Location:255 → 275
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:253 → 275
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:267 → 292
    zf-H2C2_2; Zinc-finger double domain

  2. XM_039109415.2 → XP_038965343.1  zinc finger protein 362 isoform X2

    UniProtKB/TrEMBL
    D4A633
    Conserved Domains (5) summary
    COG5189
    Location:292 → 344
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    PRK14971
    Location:14 → 118
    PRK14971; DNA polymerase III subunit gamma/tau
    sd00017
    Location:242 → 262
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:240 → 262
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:254 → 279
    zf-H2C2_2; Zinc-finger double domain

  3. XM_063287287.1 → XP_063143357.1  zinc finger protein 362 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZWA1, A6ISG0

  4. XM_006238923.5 → XP_006238985.1  zinc finger protein 362 isoform X1

    See identical proteins and their annotated locations for XP_006238985.1

    UniProtKB/TrEMBL
    A0A8I5ZWA1, A6ISG0, D4A633
    Related
    ENSRNOP00000082019.1, ENSRNOT00000098832.2
    Conserved Domains (5) summary
    COG5189
    Location:305 → 357
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    PRK14971
    Location:27 → 131
    PRK14971; DNA polymerase III subunit gamma/tau
    sd00017
    Location:255 → 275
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:253 → 275
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:267 → 292
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_005504378.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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