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RGD1562890 RGD1562890 [ Rattus norvegicus (Norway rat) ]

Gene ID: 294945, updated on 17-Aug-2024

Summary

Official Symbol
RGD1562890provided by RGD
Official Full Name
RGD1562890provided by RGD
Primary source
RGD:1562890
See related
AllianceGenome:RGD:1562890
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 10.8), Thymus (RPKM 8.2) and 9 other tissues See more
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Genomic context

See RGD1562890 in Genome Data Viewer
Location:
2q24
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (103999968..104003649, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (102083834..102087515, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (104400402..104404083, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L13, pseudogene 12 Neighboring gene DnaJ heat shock protein family (Hsp40) member C5 beta Neighboring gene transfer RNA arginine (anticodon ACG) 1 Neighboring gene transfer RNA tyrosine (anticodon GUA) 8 Neighboring gene transfer RNA tyrosine (anticodon GUA) 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037704.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    103999968..104003649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001106424.1: Suppressed sequence

    Description
    NM_001106424.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.