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Cc2d2b coiled-coil and C2 domain containing 2B [ Rattus norvegicus (Norway rat) ]

Gene ID: 294054, updated on 14-Nov-2024

Summary

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Symbol
Cc2d2bprovided by RGD
Full Name
coiled-coil and C2 domain containing 2Bprovided by RGD
Primary source
RGD:1310408
See related
EnsemblRapid:ENSRNOG00000070964 AllianceGenome:RGD:1310408
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310408
Summary
Orthologous to human CC2D2B (coiled-coil and C2 domain containing 2B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 20.2) See more
Orthologs
human mouse all
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Genomic context

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See Cc2d2b in Genome Data Viewer
Location:
1q54
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (249509371..249608894)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (239561506..239655771)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (259998744..260092810)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein C, pseudogene 6 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 1 Neighboring gene uncharacterized LOC120097545 Neighboring gene uncharacterized LOC134484043 Neighboring gene cyclin J Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in non-motile cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein localization to ciliary transition zone IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in ciliary transition zone IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
coiled-coil and C2 domain containing 2B; protein CC2D2B
Names
coiled-coil and C2 domain-containing protein 2A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    249509371..249608894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063280394.1 → XP_063136464.1  protein CC2D2B isoform X3

  2. XM_017590370.3 → XP_017445859.1  protein CC2D2B isoform X5

    UniProtKB/TrEMBL
    A0A8I6AV13
    Related
    ENSRNOP00000101721.1, ENSRNOT00000142350.1

  3. XM_017590372.3 → XP_017445861.1  protein CC2D2B isoform X6

  4. XM_039095252.2 → XP_038951180.1  protein CC2D2B isoform X4

    Conserved Domains (3) summary
    pfam15625
    Location:510 → 677
    CC2D2AN-C2; CC2D2A N-terminal C2 domain
    pfam17661
    Location:60 → 305
    DUF5523; Family of unknown function (DUF5523)
    cl14603
    Location:952 → 985
    C2; C2 domain

  5. XM_039095248.2 → XP_038951176.1  protein CC2D2B isoform X1

    Conserved Domains (3) summary
    pfam15625
    Location:510 → 677
    CC2D2AN-C2; CC2D2A N-terminal C2 domain
    pfam17661
    Location:60 → 305
    DUF5523; Family of unknown function (DUF5523)
    cl14603
    Location:952 → 985
    C2; C2 domain

  6. XM_039095254.2 → XP_038951182.1  protein CC2D2B isoform X7

    Conserved Domains (3) summary
    pfam15625
    Location:510 → 677
    CC2D2AN-C2; CC2D2A N-terminal C2 domain
    pfam17661
    Location:60 → 305
    DUF5523; Family of unknown function (DUF5523)
    cl14603
    Location:952 → 985
    C2; C2 domain

  7. XM_039095250.2 → XP_038951178.1  protein CC2D2B isoform X2

    Conserved Domains (3) summary
    pfam15625
    Location:506 → 673
    CC2D2AN-C2; CC2D2A N-terminal C2 domain
    pfam17661
    Location:60 → 301
    DUF5523; Family of unknown function (DUF5523)
    cl14603
    Location:948 → 981
    C2; C2 domain

  8. XM_039095259.2 → XP_038951187.1  protein CC2D2B isoform X10

    Conserved Domains (3) summary
    pfam15625
    Location:510 → 677
    CC2D2AN-C2; CC2D2A N-terminal C2 domain
    pfam17661
    Location:60 → 305
    DUF5523; Family of unknown function (DUF5523)
    cl14603
    Location:952 → 985
    C2; C2 domain

  9. XM_039095260.2 → XP_038951188.1  protein CC2D2B isoform X11

    Conserved Domains (3) summary
    pfam15625
    Location:510 → 677
    CC2D2AN-C2; CC2D2A N-terminal C2 domain
    pfam17661
    Location:60 → 305
    DUF5523; Family of unknown function (DUF5523)
    cl14603
    Location:952 → 985
    C2; C2 domain

  10. XM_039095256.2 → XP_038951184.1  protein CC2D2B isoform X8

    Related
    ENSRNOP00000096400.2, ENSRNOT00000103586.2
    Conserved Domains (3) summary
    pfam15625
    Location:510 → 677
    CC2D2AN-C2; CC2D2A N-terminal C2 domain
    pfam17661
    Location:60 → 305
    DUF5523; Family of unknown function (DUF5523)
    cl14603
    Location:952 → 985
    C2; C2 domain

  11. XM_017590375.3 → XP_017445864.1  protein CC2D2B isoform X9

  12. XM_063280428.1 → XP_063136498.1  protein CC2D2B isoform X12

RNA

  1. XR_005495123.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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Chemical Information
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