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Zfp507 zinc finger protein 507 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292816, updated on 9-Dec-2024

Summary

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Symbol
Zfp507provided by RGD
Full Name
zinc finger protein 507provided by RGD
Primary source
RGD:1307017
See related
EnsemblRapid:ENSRNOG00000013565 AllianceGenome:RGD:1307017
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf507
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human ZNF507 (zinc finger protein 507). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Thymus (RPKM 105.5), Spleen (RPKM 95.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfp507 in Genome Data Viewer
Location:
1q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (97572675..97605449, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (88435787..88468577, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (92089674..92119983, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene programmed cell death 5 Neighboring gene dpy-19 like C-mannosyltransferase 3 Neighboring gene uncharacterized LOC134483099 Neighboring gene uncharacterized LOC134484890 Neighboring gene uncharacterized LOC108349563

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 507

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106248.1 → NP_001099718.2  zinc finger protein 507

    See identical proteins and their annotated locations for NP_001099718.2

    Status: PROVISIONAL

    Source sequence(s)
    CH473979
    UniProtKB/TrEMBL
    A6JAC7, D3ZYC1
    Related
    ENSRNOP00000018153.5, ENSRNOT00000018153.7
    Conserved Domains (1) summary
    sd00017
    Location:684 → 705
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    97572675..97605449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063283728.1 → XP_063139798.1  zinc finger protein 507 isoform X2

  2. XM_006228885.4 → XP_006228947.1  zinc finger protein 507 isoform X1

    See identical proteins and their annotated locations for XP_006228947.1

    UniProtKB/TrEMBL
    A6JAC7, D3ZYC1
    Conserved Domains (1) summary
    sd00017
    Location:684 → 705
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_006228886.4 → XP_006228948.1  zinc finger protein 507 isoform X2

    Conserved Domains (2) summary
    sd00017
    Location:566 → 586
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:579 → 603
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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