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Ccdc97 coiled-coil domain containing 97 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292724, updated on 4-Jan-2025

Summary

Official Symbol
Ccdc97provided by RGD
Official Full Name
coiled-coil domain containing 97provided by RGD
Primary source
RGD:1309393
See related
EnsemblRapid:ENSRNOG00000020675 AllianceGenome:RGD:1309393
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309393
Summary
Orthologous to human CCDC97 (coiled-coil domain containing 97). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Thymus (RPKM 56.5), Spleen (RPKM 56.4) and 9 other tissues See more
Orthologs
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Genomic context

See Ccdc97 in Genome Data Viewer
Location:
1q21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (90347003..90354809, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (81219225..81227017, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (82503571..82511327, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482996 Neighboring gene B9 domain containing 2 Neighboring gene transforming growth factor, beta 1 Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 1 Neighboring gene Axl receptor tyrosine kinase

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
coiled-coil domain-containing protein 97

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106235.1NP_001099705.1  coiled-coil domain-containing protein 97

    See identical proteins and their annotated locations for NP_001099705.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473979
    UniProtKB/TrEMBL
    A6J987, D4A4L2
    Related
    ENSRNOP00000028065.4, ENSRNOT00000028065.7
    Conserved Domains (2) summary
    pfam09747
    Location:159326
    DUF2052; Coiled-coil domain containing protein (DUF2052)
    cl00604
    Location:27100
    STAS; Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    90347003..90354809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039104069.2XP_038959997.1  coiled-coil domain-containing protein 97 isoform X1

    Conserved Domains (1) summary
    pfam09747
    Location:18175
    DUF2052; Coiled-coil domain containing protein (DUF2052)