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Zscan5b zinc finger and SCAN domain containing 5B [ Rattus norvegicus (Norway rat) ]

Gene ID: 292566, updated on 9-Dec-2024

Summary

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Official Symbol
Zscan5bprovided by RGD
Official Full Name
zinc finger and SCAN domain containing 5Bprovided by RGD
Primary source
RGD:1559143
See related
EnsemblRapid:ENSRNOG00000049014 AllianceGenome:RGD:1559143
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559143
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to several human genes including ZSCAN5B (zinc finger and SCAN domain containing 5B). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Zscan5b in Genome Data Viewer
Location:
1q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (76699772..76707325, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (67666684..67674238, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (71334391..71342633, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 667 Neighboring gene uncharacterized LOC134482883 Neighboring gene galanin-like peptide Neighboring gene zinc finger protein 444

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 5B
Names
Znf gonad protein 1
sim to ZFP371
sim to ZFP371; Znf gonad protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    76699772..76707325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_218239.6 → XP_218239.6  zinc finger and SCAN domain-containing protein 5B

    Related
    ENSRNOP00000066733.3, ENSRNOT00000071400.4
    Conserved Domains (6) summary
    cd07936
    Location:33 → 112
    SCAN; SCAN oligomerization domain
    COG5048
    Location:261 → 432
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:356 → 411
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:334 → 354
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:444 → 466
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:374 → 399
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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