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Fsaf1 40S small subunit processome assembly factor 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 292100, updated on 27-Nov-2024

Summary

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Official Symbol
Fsaf1provided by RGD
Official Full Name
40S small subunit processome assembly factor 1provided by RGD
Primary source
RGD:1562218
See related
AllianceGenome:RGD:1562218
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1562218; C19h1orf131
Summary
Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in chromosome. Predicted to be part of small-subunit processome. Orthologous to human C1orf131 (chromosome 1 open reading frame 131). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 99.9), Heart (RPKM 94.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fsaf1 in Genome Data Viewer
Location:
19q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (69705313..69719894, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (52807932..52822259, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (57600231..57614558, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) 43 Neighboring gene tripartite motif-containing 67 Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene exocyst complex component 8 Neighboring gene SprT-like N-terminal domain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics. Ohta S, et al. Cell, 2010 Sep 3. PMID 20813266, Free PMC Article
  2. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC124748

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in ribosomal small subunit biogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in ribosomal small subunit biogenesis ISO
Inferred from Sequence Orthology
more info
  
involved_in ribosomal small subunit biogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in chromosome ISO
Inferred from Sequence Orthology
more info
  
located_in chromosome ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome ISO
Inferred from Sequence Orthology
more info
  
part_of small-subunit processome ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein C1orf131 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034919.2 → NP_001030091.1  uncharacterized protein C1orf131 homolog

    See identical proteins and their annotated locations for NP_001030091.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/Swiss-Prot
    Q3KRF3
    UniProtKB/TrEMBL
    A0A8I6AKP9, A6KJ20
    Conserved Domains (1) summary
    pfam15375
    Location:124 → 240
    DUF4602; Domain of unknown function (DUF4602)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    69705313..69719894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063277958.1 → XP_063134028.1  uncharacterized protein C1orf131 homolog isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3KRF3.1 GenPept UniProtKB/Swiss-Prot:Q3KRF3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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