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Trappc8 trafficking protein particle complex subunit 8 [ Rattus norvegicus (Norway rat) ]

Gene ID: 291750, updated on 14-Nov-2024

Summary

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Symbol
Trappc8provided by RGD
Full Name
trafficking protein particle complex subunit 8provided by RGD
Primary source
RGD:1309102
See related
EnsemblRapid:ENSRNOG00000022202 AllianceGenome:RGD:1309102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309102
Summary
Predicted to be involved in Golgi organization and collagen biosynthetic process. Predicted to be part of TRAPPIII protein complex. Orthologous to human TRAPPC8 (trafficking protein particle complex subunit 8). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 94.6), Lung (RPKM 88.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Trappc8 in Genome Data Viewer
Location:
18p12
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (12378825..12455364, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (12103874..12180422, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (15298673..15375034)

Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene importin 5, pseudogene 1 Neighboring gene uncharacterized LOC120098272 Neighboring gene small ribosomal subunit protein eS26-like Neighboring gene histone-lysine N-methyltransferase EZH2-like Neighboring gene elongation factor 2-like Neighboring gene eukaryotic translation elongation factor 2, pseudogene 4 Neighboring gene ring finger protein 125

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. C4orf41 and TTC-15 are mammalian TRAPP components with a role at an early stage in ER-to-Golgi trafficking. Scrivens PJ, et al. Mol Biol Cell, 2011 Jun 15. PMID 21525244, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in Golgi organization ISO
Inferred from Sequence Orthology
more info
  
involved_in collagen biosynthetic process ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of TRAPP complex ISO
Inferred from Sequence Orthology
more info
  
part_of TRAPPIII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
trafficking protein particle complex subunit 8
Names
trafficking protein particle complex 8
trafficking protein particle complex subunit 8-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106160.1 → NP_001099630.1  trafficking protein particle complex subunit 8

    See identical proteins and their annotated locations for NP_001099630.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473974
    UniProtKB/TrEMBL
    A6J2G6, F1M9W9
    Related
    ENSRNOP00000092280.2, ENSRNOT00000118017.2
    Conserved Domains (1) summary
    pfam12739
    Location:158 → 604
    TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086036.1 Reference GRCr8

    Range
    12378825..12455364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063277260.1 → XP_063133330.1  trafficking protein particle complex subunit 8 isoform X3

  2. XM_063277259.1 → XP_063133329.1  trafficking protein particle complex subunit 8 isoform X2

  3. XM_063277258.1 → XP_063133328.1  trafficking protein particle complex subunit 8 isoform X1

  4. XM_063277261.1 → XP_063133331.1  trafficking protein particle complex subunit 8 isoform X6

  5. XM_006254462.5 → XP_006254524.1  trafficking protein particle complex subunit 8 isoform X5

    UniProtKB/TrEMBL
    F1M9W9
    Conserved Domains (1) summary
    pfam12739
    Location:158 → 585
    TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit

  6. XM_006254461.5 → XP_006254523.1  trafficking protein particle complex subunit 8 isoform X4

    UniProtKB/TrEMBL
    F1M9W9
    Conserved Domains (1) summary
    pfam12739
    Location:158 → 586
    TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit

  7. XM_039096738.2 → XP_038952666.1  trafficking protein particle complex subunit 8 isoform X8

    UniProtKB/TrEMBL
    A0A8I6AGT6
    Conserved Domains (1) summary
    pfam12739
    Location:10 → 417
    TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit

  8. XM_063277262.1 → XP_063133332.1  trafficking protein particle complex subunit 8 isoform X7

  9. XM_063277263.1 → XP_063133333.1  trafficking protein particle complex subunit 8 isoform X9

Nucleotide Protein Strain
Heading Accession and Version

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