Prorsd1 prolyl-tRNA synthetase associated domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Prorsd1provided by RGD
Official Full Name: prolyl-tRNA synthetase associated domain containing 1provided by RGD
Primary source: RGD:1308179
See related: EnsemblRapid:ENSRNOG00000004145 AllianceGenome:RGD:1308179
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Prorsd1p; Ncrna00117; RGD1308179
Summary: Predicted to enable aminoacyl-tRNA editing activity. Predicted to be involved in aminoacyl-tRNA metabolism involved in translational fidelity. Orthologous to human PRORSD1P (prolyl-tRNA synthetase associated domain containing 1, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Muscle (RPKM 53.0), Kidney (RPKM 50.7) and 9 other tissues See more
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Genomic context

Location:: 14q22

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	14	NC_086032.1 (107458910..107461179, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	14	NC_051349.1 (103257979..103260248, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	14	NC_005113.4 (113938061..113940330, complement)

Chromosome 14 - NC_086032.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables aminoacyl-tRNA editing activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in aminoacyl-tRNA metabolism involved in translational fidelity	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: prdX-deacylase domain-containing protein 1

Names: PrdX-deacylase domain 1; prolyl-tRNA synthetase associated domain containing 1, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106022.1 → NP_001099492.1 prdX-deacylase domain-containing protein 1

See identical proteins and their annotated locations for NP_001099492.1

Status: PROVISIONAL

Source sequence(s)

CH473996

UniProtKB/TrEMBL

A6JQB4, B2RZA5, F7EP18

Related

ENSRNOP00000005504.5, ENSRNOT00000005504.9

Conserved Domains (1) summary

cd04335
Location:7 → 166

PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...