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Nenf neudesin neurotrophic factor [ Rattus norvegicus (Norway rat) ]

Gene ID: 289380, updated on 4-Jan-2025

Summary

Official Symbol
Nenfprovided by RGD
Official Full Name
neudesin neurotrophic factorprovided by RGD
Primary source
RGD:1303289
See related
EnsemblRapid:ENSRNOG00000003833 AllianceGenome:RGD:1303289
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Spuf; SCIRP10
Summary
Predicted to enable growth factor activity. Predicted to be involved in negative regulation of appetite. Predicted to act upstream of or within positive regulation of MAPK cascade. Located in endoplasmic reticulum and mitochondrion. Orthologous to human NENF (neudesin neurotrophic factor). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Heart (RPKM 352.2), Lung (RPKM 199.8) and 9 other tissues See more
Orthologs
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Genomic context

See Nenf in Genome Data Viewer
Location:
13q27
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (105419113..105425911, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (102888004..102894804, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (109990294..109997092, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene golgi associated RAB2 interactor family member 4 Neighboring gene activating transcription factor 3 Neighboring gene uncharacterized LOC102555043 Neighboring gene uncharacterized LOC102555129 Neighboring gene uncharacterized LOC134481545 Neighboring gene proton activated chloride channel 1 Neighboring gene protein phosphatase 2, regulatory subunit B', alpha

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables growth factor activity ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of MAPK cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of appetite ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of appetite ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within positive regulation of MAPK cascade ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
neudesin
Names
SCIRP10-related protein
Spinal cord injury related protein 10
neuron-derived neurotrophic factor
secreted protein of unknown function
spinal cord injury-related protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002851.1NP_001002851.1  neudesin precursor

    See identical proteins and their annotated locations for NP_001002851.1

    Status: PROVISIONAL

    Source sequence(s)
    AY623793
    UniProtKB/Swiss-Prot
    Q6IUR5
    UniProtKB/TrEMBL
    A6JGZ4
    Related
    ENSRNOP00000102526.1, ENSRNOT00000147204.1
    Conserved Domains (1) summary
    pfam00173
    Location:45100
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    105419113..105425911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)