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GVI51_F00825 RNA exonuclease [ Nakaseomyces glabratus ]

Gene ID: 2887962, updated on 6-Dec-2024

Summary

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Gene symbol
GVI51_F00825
Gene description
RNA exonuclease
Locus tag
GVI51_F00825
See related
FungiDB:GVI51_F00825; VEuPathDB:GVI51_F00825
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nakaseomyces glabratus (strain: ATCC 2001, nat-host: Homo sapiens, culture-collection: ATCC:2001, type-material: type material of Cryptococcus glabratus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces
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Genomic context

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See GVI51_F00825 in Genome Data Viewer
Location:
chromosome: F
Exon count:
1
Sequence:
Chromosome: F; NC_088956.1 (129872..130951)

Chromosome F - NC_088956.1Genomic Context describing neighboring genes Neighboring gene TPD3 Neighboring gene bifunctional N-glycosylase/AP lyase NTG2 Neighboring gene uncharacterized protein Neighboring gene 40S ribosomal protein uS19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088956.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Xu Z, et al. Mol Microbiol, 2020 Jun. PMID 32068314
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • CAGL0F01001g
    Ortholog(s) have mitochondrion localization

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA exonuclease
XP_446017.1
  • CAGL0F01001g
    Ortholog(s) have mitochondrion localization

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_088956.1 Reference assembly

    Range
    129872..130951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_446017.1 → XP_446017.1  RNA exonuclease [Nakaseomyces glabratus]

    See identical proteins and their annotated locations for XP_446017.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0W0DGM1, Q6FUS7
    Conserved Domains (1) summary
    cl00490
    Location:2 → 359
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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