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GVI51_F03223 uncharacterized protein [ Nakaseomyces glabratus ]

Gene ID: 2887899, updated on 6-Dec-2024

Summary

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Gene symbol
GVI51_F03223
Gene description
uncharacterized protein
Locus tag
GVI51_F03223
See related
FungiDB:GVI51_F03223; VEuPathDB:GVI51_F03223
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nakaseomyces glabratus (strain: ATCC 2001, nat-host: Homo sapiens, culture-collection: ATCC:2001, type-material: type material of Cryptococcus glabratus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces
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Genomic context

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See GVI51_F03223 in Genome Data Viewer
Location:
chromosome: F
Exon count:
1
Sequence:
Chromosome: F; NC_088956.1 (368160..369932)

Chromosome F - NC_088956.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-ubiquitin ligase BUL1 Neighboring gene chromatin DNA-binding EKC/KEOPS complex subunit GON7 Neighboring gene uncharacterized protein Neighboring gene DAP1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088956.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays. Xu Z, et al. Mol Microbiol, 2020 Jun. PMID 32068314
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • CAGL0F03531g
    Ortholog(s) have mRNA binding activity and role in poly(A)+ mRNA export from nucleus, ribosomal large subunit export from nucleus, ribosomal small subunit export from nucleus

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
XP_446123.1
  • CAGL0F03531g
    Ortholog(s) have mRNA binding activity and role in poly(A)+ mRNA export from nucleus, ribosomal large subunit export from nucleus, ribosomal small subunit export from nucleus

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_088956.1 Reference assembly

    Range
    368160..369932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_446123.1 → XP_446123.1  uncharacterized protein GVI51_F03223 [Nakaseomyces glabratus]

    See identical proteins and their annotated locations for XP_446123.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0W0DGF9, Q6FUH1
    Conserved Domains (5) summary
    smart00804
    Location:528 → 588
    TAP_C; C-terminal domain of vertebrate Tap protein
    sd00035
    Location:116 → 158
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam18444
    Location:23 → 92
    RRM_9; RNA recognition motif
    cd21340
    Location:165 → 253
    PPP1R42; protein phosphatase 1 regulatory subunit 42
    cl09109
    Location:353 → 459
    NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of ...
Nucleotide Protein
Heading Accession and Version

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