U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Mrps17 mitochondrial ribosomal protein S17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288621, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Symbol
Mrps17provided by RGD
Full Name
mitochondrial ribosomal protein S17provided by RGD
Primary source
RGD:1307650
See related
EnsemblRapid:ENSRNOG00000066020 AllianceGenome:RGD:1307650
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS17 (mitochondrial ribosomal protein S17). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 141.9), Kidney (RPKM 121.6) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Mrps17 in Genome Data Viewer
Location:
12q13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (32584635..32587934, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (26948535..26951828, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (30570386..30573670, complement)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene phosphoserine phosphatase Neighboring gene nipsnap homolog 2 Neighboring gene small nucleolar RNA SNORA76 Neighboring gene septin 14 Neighboring gene 40S ribosomal protein S25 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Ribosome. The structure of the human mitochondrial ribosome. Amunts A, et al. Science, 2015 Apr 3. PMID 25838379, Free PMC Article
  2. Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit. Suzuki T, et al. J Biol Chem, 2001 Aug 31. PMID 11402041
  3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
  4. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
  5. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of mitochondrial small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
small ribosomal subunit protein uS17m
Names
28S ribosomal protein S17, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105923.1 → NP_001099393.1  small ribosomal subunit protein uS17m

    See identical proteins and their annotated locations for NP_001099393.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473973
    UniProtKB/TrEMBL
    A6J0Q4, D3ZTR1
    Related
    ENSRNOP00000076230.3, ENSRNOT00000093534.3
    Conserved Domains (1) summary
    pfam00366
    Location:15 → 83
    Ribosomal_S17; Ribosomal protein S17

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    32584635..32587934 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006249264.5 → XP_006249326.1  small ribosomal subunit protein uS17m isoform X1

    See identical proteins and their annotated locations for XP_006249326.1

    UniProtKB/TrEMBL
    A6J0Q4, D3ZTR1
    Conserved Domains (1) summary
    pfam00366
    Location:15 → 83
    Ribosomal_S17; Ribosomal protein S17

  2. XM_063271165.1 → XP_063127235.1  small ribosomal subunit protein uS17m isoform X1

    UniProtKB/TrEMBL
    A6J0Q4, D3ZTR1

  3. XM_017598301.3 → XP_017453790.1  small ribosomal subunit protein uS17m isoform X1

    UniProtKB/TrEMBL
    A6J0Q4, D3ZTR1
    Conserved Domains (1) summary
    pfam00366
    Location:15 → 83
    Ribosomal_S17; Ribosomal protein S17

  4. XM_039089223.2 → XP_038945151.1  small ribosomal subunit protein uS17m isoform X1

    UniProtKB/TrEMBL
    A6J0Q4, D3ZTR1
    Conserved Domains (1) summary
    pfam00366
    Location:15 → 83
    Ribosomal_S17; Ribosomal protein S17
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous