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LSH9 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 28720146, updated on 18-Sep-2024

Summary

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Official Symbol
LSH9
Official Full Name
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Primary source
TAIR:AT4G18610
Locus tag
AT4G18610
See related
Araport:AT4G18610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28A21.20; F28A21_20; LIGHT SENSITIVE HYPOCOTYLS 9
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Genomic context

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See LSH9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (10250601..10253148)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene dual specificity protein phosphatase-like protein Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene SCAR family protein Neighboring gene ncRNA Neighboring gene PYR1-like 13 Neighboring gene hypothetical protein (DUF688)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341301.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mRNA transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in post-embryonic plant morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
NP_001319986.1
  • LIGHT SENSITIVE HYPOCOTYLS 9 (LSH9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 307 Blast hits to 307 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 293; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10250601..10253148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341301.1 → NP_001319986.1  LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SN52
    UniProtKB/TrEMBL
    A0A178UWQ0, A0A5S9XTR4, A0A654FQN5
    Conserved Domains (1) summary
    pfam04852
    Location:36 → 151
    DUF640; Protein of unknown function (DUF640)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SN52.1

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases