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RALFL15 RALF-like 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 28718292, updated on 18-Sep-2024

Summary

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Official Symbol
RALFL15
Official Full Name
RALF-like 15
Primary source
TAIR:AT2G22055
Locus tag
AT2G22055
See related
Araport:AT2G22055
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RALF-like 15
Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. This gene is contained within a highly AT-rich repetitive sequence region.
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Genomic context

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See RALFL15 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (9379465..9380114)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene galactose oxidase/kelch repeat protein Neighboring gene pentatricopeptide (PPR) repeat-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. Olsen AN, et al. In Silico Biol, 2002. PMID 12611624
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001335782.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hormone activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in calcium-mediated signaling ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cell-cell signaling ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RALF-like 15
NP_001318265.1
  • RALF-like 15 (RALFL15); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 8 (TAIR:AT1G61563.1); Has 47 Blast hits to 47 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9379465..9380114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335782.1 → NP_001318265.1  RALF-like 15 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQM7
    UniProtKB/TrEMBL
    A0A178VT91, A0A5S9X091, A0A654EV22
    Conserved Domains (1) summary
    pfam05498
    Location:29 → 74
    RALF; Rapid ALkalinization Factor (RALF)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8MQM7.1

Gene LinkOut

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Molecular Biology Databases