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CLE16 CLAVATA3/ESR-RELATED 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 28717514, updated on 18-Sep-2024

Summary

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Official Symbol
CLE16
Official Full Name
CLAVATA3/ESR-RELATED 16
Primary source
TAIR:AT2G01505
Locus tag
AT2G01505
See related
Araport:AT2G01505
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CLAVATA3/ESR-RELATED 16
Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
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Genomic context

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See CLE16 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (228577..229899, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phytanoyl-CoA dioxygenase (PhyH) family protein Neighboring gene Homeodomain-like superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene MLP-like protein 328 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Control of Root Stem Cell Differentiation and Lateral Root Emergence by CLE16/17 Peptides in Arabidopsis. Zhang L, et al. Front Plant Sci, 2022. PMID 35519820, Free PMC Article
  2. BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots. Crook AD, et al. Proc Natl Acad Sci U S A, 2020 Dec 22. PMID 33288706, Free PMC Article
  3. The signaling peptide-encoding genes CLE16, CLE17 and CLE27 are dispensable for Arabidopsis shoot apical meristem activity. Gregory EF, et al. PLoS One, 2018. PMID 30114285, Free PMC Article
  4. Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature. Hazak O, et al. EMBO Rep, 2017 Aug. PMID 28607033, Free PMC Article
  5. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots.
    Title: BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots.
  2. Our results indicate that the CLE16, CLE17 and CLE27 genes have largely redundant roles in the Arabidopsis shoot apical meristem and/or regulate meristem activity only under specific environmental conditions.
    Title: The signaling peptide-encoding genes CLE16, CLE17 and CLE27 are dispensable for Arabidopsis shoot apical meristem activity.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001335066.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cell-cell signaling involved in cell fate commitment ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in lateral root formation IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in maintenance of root meristem identity IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in maintenance of root meristem identity IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in phloem development IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of cell differentiation IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in regulation of cell differentiation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in stem cell differentiation IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast ISM
Inferred from Sequence Model
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CLAVATA3/ESR-RELATED 16
NP_001318176.1
  • CLAVATA3/ESR-RELATED 16 (CLE16); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    228577..229899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335066.1 → NP_001318176.1  CLAVATA3/ESR-RELATED 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8S8M2
    UniProtKB/TrEMBL
    A0A178W037, A0A5S9WWA9
    Conserved Domains (2) summary
    cd00096
    Location:69 → 75
    Ig; Ig strand C [structural motif]
    cl11960
    Location:67 → 97
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8S8M2.1

Gene LinkOut

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Molecular Biology Databases