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Zfand4 zinc finger AN1-type containing 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 286998, updated on 27-Nov-2024

Summary

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Official Symbol
Zfand4provided by RGD
Official Full Name
zinc finger AN1-type containing 4provided by RGD
Primary source
RGD:628707
See related
EnsemblRapid:ENSRNOG00000011791 AllianceGenome:RGD:628707
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Rsd7; Anubl1
Summary
Predicted to enable zinc ion binding activity. Orthologous to human ZFAND4 (zinc finger AN1-type containing 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 148.5), Adrenal (RPKM 58.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zfand4 in Genome Data Viewer
Location:
4q42
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (150999821..151071942)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (149327339..149399495)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (148198810..148270273)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domain family 1 Neighboring gene small RNA binding exonuclease protection factor La like 1 Neighboring gene WASH complex subunit 2C Neighboring gene ribosomal protein L9, pseudogene 19 Neighboring gene membrane associated ring-CH-type finger 8 Neighboring gene ribosomal protein L23A like 6 Neighboring gene transfer RNA proline (anticodon GGG) 3 Neighboring gene arachidonate 5-lipoxygenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
AN1-type zinc finger protein 4
Names
AN1, ubiquitin-like, homolog
AN1-type zinc finger and ubiquitin domain-containing protein 1
zinc finger, AN1-type domain 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173332.3 → NP_775454.3  AN1-type zinc finger protein 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    F7EY43
    Related
    ENSRNOP00000110180.1, ENSRNOT00000141253.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    150999821..151071942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039107168.1 → XP_038963096.1  AN1-type zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    B1WC93
    Conserved Domains (1) summary
    cd01802
    Location:54 → 127
    Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

  2. XM_063285659.1 → XP_063141729.1  AN1-type zinc finger protein 4 isoform X3

    Related
    ENSRNOP00000112245.1, ENSRNOT00000142625.1

  3. XM_063285657.1 → XP_063141727.1  AN1-type zinc finger protein 4 isoform X1

  4. XM_039107170.2 → XP_038963098.1  AN1-type zinc finger protein 4 isoform X2

    UniProtKB/TrEMBL
    B1WC93
    Conserved Domains (1) summary
    cd01802
    Location:54 → 127
    Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

  5. XM_063285660.1 → XP_063141730.1  AN1-type zinc finger protein 4 isoform X3

    Related
    ENSRNOP00000015742.6, ENSRNOT00000015742.8

  6. XM_006237141.4 → XP_006237203.1  AN1-type zinc finger protein 4 isoform X3

    See identical proteins and their annotated locations for XP_006237203.1

    UniProtKB/TrEMBL
    B1WC93
    Conserved Domains (3) summary
    cd01802
    Location:45 → 147
    AN1_N; ubiquitin-like domain of AN1
    smart00154
    Location:699 → 737
    ZnF_AN1; AN1-like Zinc finger
    smart00213
    Location:72 → 143
    UBQ; Ubiquitin homologues

  7. XM_039107167.2 → XP_038963095.1  AN1-type zinc finger protein 4 isoform X1

    UniProtKB/TrEMBL
    B1WC93
    Conserved Domains (1) summary
    cd01802
    Location:72 → 145
    Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

  8. XM_039107172.2 → XP_038963100.1  AN1-type zinc finger protein 4 isoform X4

    UniProtKB/TrEMBL
    B1WC93
    Conserved Domains (1) summary
    cd01802
    Location:72 → 145
    Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

  9. XM_039107179.2 → XP_038963107.1  AN1-type zinc finger protein 4 isoform X8

    Conserved Domains (1) summary
    cd01802
    Location:72 → 145
    Ubl_ZFAND4; ubiquitin-like (Ubl) domain found in AN1-type zinc finger protein 4 (ZFAND4) and similar proteins

  10. XM_063285658.1 → XP_063141728.1  AN1-type zinc finger protein 4 isoform X1

  11. XM_039107173.2 → XP_038963101.1  AN1-type zinc finger protein 4 isoform X5

  12. XM_063285661.1 → XP_063141731.1  AN1-type zinc finger protein 4 isoform X6

  13. XM_039107177.2 → XP_038963105.1  AN1-type zinc finger protein 4 isoform X7

  14. XM_039107174.2 → XP_038963102.1  AN1-type zinc finger protein 4 isoform X5

  15. XM_063285662.1 → XP_063141732.1  AN1-type zinc finger protein 4 isoform X7

Nucleotide Protein Strain
Heading Accession and Version

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