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BCORP1 BCL6 corepressor pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 286554, updated on 22-Oct-2024

Summary

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Official Symbol
BCORP1provided by HGNC
Official Full Name
BCL6 corepressor pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:23953
See related
Ensembl:ENSG00000291031 AllianceGenome:HGNC:23953
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BCORL2
Expression
Low expression observed in reference dataset See more
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Genomic context

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See BCORP1 in Genome Data Viewer
Location:
Yq11.222
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (19455431..19503153, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (20362013..20409717, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (21617317..21665039, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905306 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 19 Neighboring gene BCL-6 corepressor-like Neighboring gene uncharacterized LOC105377223 Neighboring gene taxilin gamma Y-linked (pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • BCL-6 corepressor pseudogene 1
  • BCL-6 corepressor-like protein 2
  • BCL6 co-repressor pseudogene
  • BCL6 co-repressor-like 2
  • BCL6 corepressor-like 2
  • BCoR-like protein 2
  • putative BCoR-like protein 2

Clone Names

  • FLJ39821

General protein information

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Preferred Names
putative BCoR-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002923.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon, compared to variant 1.
    Source sequence(s)
    AC010137, AK097140
    Related
    ENST00000441139.6

  2. NR_033732.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC010137, BC063452

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    19455431..19503153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    20362013..20409717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002921.1: Suppressed sequence

    Description
    NG_002921.1: This RefSeq was permanently suppressed because the locus type was changed from pseudogene to transcribed pseudogene.

  2. NM_001173413.1: Suppressed sequence

    Description
    NM_001173413.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

  3. NM_173700.1: Suppressed sequence

    Description
    NM_173700.1: This RefSeq was permanently suppressed because the locus type was changed from protein coding gene to pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N888.1 GenPept UniProtKB/Swiss-Prot:Q8N888

Gene LinkOut

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Chemical Information
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Research Materials