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AGA-DT AGA divergent transcript [ Homo sapiens (human) ]

Gene ID: 285500, updated on 17-Sep-2024

Summary

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Official Symbol
AGA-DTprovided by HGNC
Official Full Name
AGA divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:27730
See related
Ensembl:ENSG00000250131 AllianceGenome:HGNC:27730
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See AGA-DT in Genome Data Viewer
Location:
4q34.3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (177442514..177697910)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (180781185..181036231)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (178363668..178619064)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377558 Neighboring gene Sharpr-MPRA regulatory region 1660 Neighboring gene nei like DNA glycosylase 3 Neighboring gene Sharpr-MPRA regulatory region 1546 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22170 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22171 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:178363543-178364086 Neighboring gene RNA, 5S ribosomal pseudogene 172 Neighboring gene aspartylglucosaminidase Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC105377559 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:178649038-178650237 Neighboring gene uncharacterized LOC105377560 Neighboring gene long intergenic non-protein coding RNA 1098 Neighboring gene uncharacterized LOC124900914 Neighboring gene long intergenic non-protein coding RNA 1099

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183777.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  2. NR_183778.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  3. NR_183779.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  4. NR_183780.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  5. NR_183781.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879

  6. NR_183782.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  7. NR_183783.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879

  8. NR_183784.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  9. NR_183785.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  10. NR_183786.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  11. NR_183787.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  12. NR_183788.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
    Related
    ENST00000507023.1

  13. NR_183789.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880

  14. NR_183790.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC106880

  15. NR_183791.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  16. NR_183792.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  17. NR_183793.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  18. NR_183794.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  19. NR_183795.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  20. NR_183796.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  21. NR_183797.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  22. NR_183798.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  23. NR_183799.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  24. NR_183800.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

  25. NR_183801.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    177442514..177697910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    180781185..181036231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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