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dgoR DNA-binding transcriptional regulator DgoR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 2847767, updated on 3-Dec-2024

Summary

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Official Symbol
dgoR
Official Full Name
DNA-binding transcriptional regulator DgoR
Primary source
ECOCYC:G7789
Locus tag
b4479
See related
ASAP:ABE-0174108
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
b3694; b3695; ECK3687; yidW
Summary
DgoR is a GntR-type DNA-binding transcriptional regulator. [More information is available at EcoGene: EG11718]. DgoR belongs to the FadR family of transcriptional regulators . [More information is available at EcoCyc: G7789].
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Genomic context

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Sequence:
NC_000913.3 (3874471..3875160, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene colicin M resistance protein Neighboring gene D-galactonate:H(+) symporter Neighboring gene D-galactonate dehydratase Neighboring gene 2-dehydro-3-deoxy-6-phosphogalactonate aldolase Neighboring gene 2-dehydro-3-deoxygalactonokinase Neighboring gene putative lipoprotein YidX Neighboring gene sugar phosphatase YidA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria. Belliveau NM, et al. Proc Natl Acad Sci U S A, 2018 May 22. PMID 29728462, Free PMC Article
  2. A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids. Babbitt PC, et al. Science, 1995 Feb 24. PMID 7855594
  3. Identification of genes affecting lycopene accumulation in Escherichia coli using a shot-gun method. Kang MJ, et al. Biotechnol Bioeng, 2005 Sep 5. PMID 15898075
  4. The utilisation of D-galactonate and D-2-oxo-3-deoxygalactonate by Escherichia coli K-12. Biochemical and genetical studies. Cooper RA. Arch Microbiol, 1978 Aug 1. PMID 211976
  5. D-Galactonate utilisation by enteric bacteria. The catabolic pathway in Escherichia coli. Deacon J, et al. FEBS Lett, 1977 May 15. PMID 324806

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription repressor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables ligand-activated transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription initiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional regulator DgoR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3874471..3875160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_026239.1 DNA-binding transcriptional regulator DgoR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_026239.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A485J6M7
    Conserved Domains (1) summary
    COG2186
    Location:2 → 229
    FadR; DNA-binding transcriptional regulator, FadR family [Transcription]
Nucleotide Protein
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