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sdc2 syndecan 2 [ Danio rerio (zebrafish) ]

Gene ID: 282667, updated on 9-Dec-2024

Summary

Official Symbol
sdc2provided by ZNC
Official Full Name
syndecan 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-021206-3
See related
Ensembl:ENSDARG00000002731 AllianceGenome:ZFIN:ZDB-GENE-021206-3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb440; zgc:103676
Summary
Acts upstream of or within several processes, including Kupffer's vesicle development; circulatory system development; and epiboly involved in gastrulation with mouth forming second. Predicted to be located in membrane. Predicted to be active in cell surface. Is expressed in several structures, including cardiovascular system; digestive system; endoderm; fin; and nervous system. Human ortholog(s) of this gene implicated in cleft lip and cleft palate. Orthologous to human SDC2 (syndecan 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See sdc2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (47191403..47276297, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (47599807..47684701, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene angiopoietin 1 Neighboring gene uncharacterized LOC137488558 Neighboring gene uncharacterized LOC137488557 Neighboring gene protein phosphatase 1 regulatory subunit 36 Neighboring gene thiopurine S-methyltransferase, tandem duplicate 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Pathways from PubChem

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173223.2NP_775330.2  syndecan-2 precursor

    See identical proteins and their annotated locations for NP_775330.2

    Status: PROVISIONAL

    Source sequence(s)
    BC081509
    UniProtKB/TrEMBL
    Q66I66
    Related
    ENSDARP00000115190.2, ENSDART00000141437.3
    Conserved Domains (1) summary
    pfam01034
    Location:145206
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    47191403..47276297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)