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CALCOCO2 calcium binding and coiled-coil domain 2 [ Bos taurus (domestic cattle) ]

Gene ID: 281942, updated on 27-Dec-2024

Summary

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Official Symbol
CALCOCO2provided by VGNC
Official Full Name
calcium binding and coiled-coil domain 2provided by VGNC
Primary source
VGNC:VGNC:26703
See related
BGD:BT25065; Ensembl:ENSBTAG00000007935
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
NDP52
Orthologs
human mouse all
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Genomic context

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See CALCOCO2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (37678759..37702394, complement)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343061 Neighboring gene small nucleolar RNA U89 Neighboring gene ATP synthase membrane subunit c locus 1 Neighboring gene tubulin tyrosine ligase like 6 Neighboring gene microRNA mir-1814a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xenophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-binding and coiled-coil domain-containing protein 2
Names
antigen nuclear dot 52 kDa protein
nuclear domain 10 protein 52
nuclear domain 10 protein NDP52
nuclear dot protein 52

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174400.2 → NP_776825.1  calcium-binding and coiled-coil domain-containing protein 2

    See identical proteins and their annotated locations for NP_776825.1

    Status: PROVISIONAL

    Source sequence(s)
    AB008852
    UniProtKB/Swiss-Prot
    O18737
    UniProtKB/TrEMBL
    A0AAA9TWS0, B1H0X0
    Conserved Domains (2) summary
    cl25732
    Location:22 → 311
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27568
    Location:302 → 347
    TIP49; TIP49 C-terminus

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    37678759..37702394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005220485.5 → XP_005220542.4  calcium-binding and coiled-coil domain-containing protein 2 isoform X2

    UniProtKB/Swiss-Prot
    O18737
    UniProtKB/TrEMBL
    A0AAA9TWS0, B1H0X0
    Related
    ENSBTAP00000098895.1, ENSBTAT00000113380.1

  2. XM_059877722.1 → XP_059733705.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A452DI74
    Related
    ENSBTAP00000010432.6, ENSBTAT00000010432.6

  3. XM_059877723.1 → XP_059733706.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A452DI74

  4. XM_059877724.1 → XP_059733707.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O18737.1 GenPept UniProtKB/Swiss-Prot:O18737

Gene LinkOut

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Molecular Biology Databases
Research Materials