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CABP1 calcium binding protein 1 [ Bos taurus (domestic cattle) ]

Gene ID: 281653, updated on 1-Jan-2025

Summary

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Official Symbol
CABP1provided by VGNC
Official Full Name
calcium binding protein 1provided by VGNC
Primary source
VGNC:VGNC:53893
See related
BGD:BT11877; Ensembl:ENSBTAG00000020049
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See CABP1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (62859168..62919832)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 10 Neighboring gene POP5 homolog, ribonuclease P/MRP subunit Neighboring gene malectin Neighboring gene unc-119 lipid binding chaperone B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. Ca2+ binding protein-1 inhibits Ca2+ currents and exocytosis in bovine chromaffin cells. Chen ML, et al. J Biomed Sci, 2008 Mar. PMID 17960496
  2. Five members of a novel Ca(2+)-binding protein (CABP) subfamily with similarity to calmodulin. Haeseleer F, et al. J Biol Chem, 2000 Jan 14. PMID 10625670, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the importance of CaBP1s in modulating the stimulus-secretion coupling in excitable cells.
    Title: Ca2+ binding protein-1 inhibits Ca2+ currents and exocytosis in bovine chromaffin cells.
Submit: New GeneRIF Correction

General gene information

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Homology

Clone Names

  • MGC148706

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-binding protein 1
Names
calcium binding protein 1 (calbrain)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174254.2 → NP_776679.1  calcium-binding protein 1

    See identical proteins and their annotated locations for NP_776679.1

    Status: PROVISIONAL

    Source sequence(s)
    AF169151
    UniProtKB/Swiss-Prot
    Q9N1R0, Q9N1R1
    UniProtKB/TrEMBL
    A0AAF6ZFA1
    Related
    ENSBTAP00000072049.1, ENSBTAT00000083615.2
    Conserved Domains (1) summary
    PTZ00184
    Location:77 → 224
    PTZ00184; calmodulin; Provisional

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    62859168..62919832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024977006.2 → XP_024832774.1  calcium-binding protein 1 isoform X3

    Conserved Domains (1) summary
    cl25352
    Location:109 → 256
    EFh_PEF; The penta-EF hand (PEF) family

  2. XM_024977004.2 → XP_024832772.1  calcium-binding protein 1 isoform X1

    Conserved Domains (1) summary
    cl25352
    Location:280 → 427
    EFh_PEF; The penta-EF hand (PEF) family

  3. XM_024977005.2 → XP_024832773.1  calcium-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0AAA9RYL7
    Related
    ENSBTAP00000076226.1, ENSBTAT00000131660.1
    Conserved Domains (1) summary
    cl25352
    Location:221 → 368
    EFh_PEF; The penta-EF hand (PEF) family

  4. XM_059875875.1 → XP_059731858.1  calcium-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0AAF6ZFA1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9N1R0.3 GenPept UniProtKB/Swiss-Prot:Q9N1R0

Gene LinkOut

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