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LYZ3 lysozyme 3 [ Bos taurus (domestic cattle) ]

Gene ID: 281289, updated on 27-Dec-2024

Summary

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Gene symbol
LYZ3
Gene description
lysozyme 3
See related
BGD:BT10367; Ensembl:ENSBTAG00000046628
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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Genomic context

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See LYZ3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (44423780..44430774, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene lysozyme C-2 Neighboring gene lysozyme (renal amyloidosis) Neighboring gene lysozyme C-2 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. Characterization of the cow stomach lysozyme genes: repetitive DNA and concerted evolution. Irwin DM, et al. J Mol Evol, 1993 Oct. PMID 8308905
  2. Multiple cDNA sequences and the evolution of bovine stomach lysozyme. Irwin DM, et al. J Biol Chem, 1989 Jul 5. PMID 2738070
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to Gram-positive bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysozyme C-3
Names
1,4-beta-N-acetylmuramidase C
NP_776529.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174104.2 → NP_776529.1  lysozyme C-3 precursor

    See identical proteins and their annotated locations for NP_776529.1

    Status: PROVISIONAL

    Source sequence(s)
    M26242
    UniProtKB/Swiss-Prot
    P04421, Q06284
    Related
    ENSBTAP00000027399.5, ENSBTAT00000027399.6
    Conserved Domains (1) summary
    smart00263
    Location:19 → 145
    LYZ1; Alpha-lactalbumin / lysozyme C

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    44423780..44430774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q06284.2 GenPept UniProtKB/Swiss-Prot:Q06284

Gene LinkOut

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