U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VIM vimentin [ Bos taurus (domestic cattle) ]

Gene ID: 280955, updated on 27-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
VIMprovided by VGNC
Official Full Name
vimentinprovided by VGNC
Primary source
VGNC:VGNC:36796
See related
BGD:BT11168; Ensembl:ENSBTAG00000018463
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See VIM in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (31653816..31661745)

Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene cubilin Neighboring gene tRNA aspartic acid methyltransferase 1 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene 3-hydroxyacyl-CoA dehydratase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Dynamic expression of vimentin in bovine blastocysts in extended in vitro culture. Ikeda S, et al. Reprod Domest Anim, 2010 Apr. PMID 19019059
  2. Disassembly of the vimentin cytoskeleton disrupts articular cartilage chondrocyte homeostasis. Blain EJ, et al. Matrix Biol, 2006 Sep. PMID 16876394
  3. Nucleotide sequence of the bovine vimentin-encoding cDNA. Hess JF, et al. Gene, 1994 Mar 25. PMID 8144034
  4. A possible role of vimentin on the cell surface for the activation of latent transforming growth factor-beta. Nishida Y, et al. FEBS Lett, 2009 Jan 22. PMID 19121313
  5. Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: improper reprogramming of genes required for development. Pfister-Genskow M, et al. Biol Reprod, 2005 Mar. PMID 15483223

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Immunocytochemistry for Vimentin detection in nuclei of IVF and NT bovine embryos
    Title: Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: improper reprogramming of genes required for development.
  2. These results indicate that the inner mass differentiates dynamically in blastocysts, as reflected by the expression of vimentin; higher vimentin expression may reflect the higher developmental competence of embryos.
    Title: Dynamic expression of vimentin in bovine blastocysts in extended in vitro culture.
  3. an intact vimentin intermediate filament network contributes to the maintenance of the chondrocyte phenotype
    Title: Disassembly of the vimentin cytoskeleton disrupts articular cartilage chondrocyte homeostasis.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC139781

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vimentin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173969.3 → NP_776394.2  vimentin

    See identical proteins and their annotated locations for NP_776394.2

    Status: PROVISIONAL

    Source sequence(s)
    BC118269
    UniProtKB/Swiss-Prot
    P48616, Q17QM7
    Related
    ENSBTAP00000024572.3, ENSBTAT00000024572.4
    Conserved Domains (2) summary
    pfam00038
    Location:102 → 410
    Filament; Intermediate filament protein
    pfam04732
    Location:14 → 101
    Filament_head; Intermediate filament head (DNA binding) region

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    31653816..31661745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P48616.3 GenPept UniProtKB/Swiss-Prot:P48616

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.