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Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 2745737, updated on 18-Sep-2024

Summary

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Official Full Name
Uncharacterized protein family (UPF0497)
Primary source
TAIR:AT4G37235
Locus tag
AT4G37235
See related
Araport:AT4G37235
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CASP-like protein 5C1; CASPL5C1
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (17517743..17519785)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cold acclimation protein WCOR413 family Neighboring gene ncRNA Neighboring gene Photosystem II manganese-stabilising protein (PsbO) family Neighboring gene HTH-type transcriptional regulator Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_202971.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
Uncharacterized protein family (UPF0497)
NP_974700.1
  • Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G50810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17517743..17519785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202971.2 → NP_974700.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974700.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q66GI1
    UniProtKB/TrEMBL
    A0A178UV86, A0A5S9XZD3
    Conserved Domains (1) summary
    pfam04535
    Location:9 → 134
    DUF588; Domain of unknown function (DUF588)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66GI1.1

Gene LinkOut

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