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lncRNA:CR45919 long non-coding RNA:CR45919 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 26067247, updated on 9-Dec-2024

Summary

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Official Symbol
lncRNA:CR45919provided by FlyBase
Official Full Name
long non-coding RNA:CR45919provided by FlyBase
Primary source
FLYBASE:FBgn0267579
Locus tag
Dmel_CR45919
See related
AllianceGenome:FB:FBgn0267579
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR45919; Dmel\CR45919; pri-mir-124
Summary
Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See lncRNA:CR45919 in Genome Data Viewer
Location:
36D1-36D1; 2-53 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (17560813..17566551)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45697 Neighboring gene uncharacterized protein Neighboring gene mir-124 stem loop Neighboring gene long non-coding RNA:CR45358 Neighboring gene mir-287 stem loop

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_033779.5 Chromosome 2L Reference Release 6 plus ISO1 MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative Expression Dynamics of Intergenic Long Noncoding RNAs in the Genus Drosophila. Nyberg KG, et al. Genome Biol Evol, 2016 Jun 27. PMID 27189981, Free PMC Article
  2. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR45919-RA; Dmel\lncRNA:CR45919-RA; CR45919-RA; Dmel\CR45919-RA
  • lncRNA:CR45919-RB; Dmel\lncRNA:CR45919-RB; CR45919-RB; Dmel\CR45919-RB

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    17560813..17566551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_133086.1 RNA Sequence

    Status: REVIEWED

  2. NR_133087.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.