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lncRNA:CR43406 long non-coding RNA:CR43406 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 26067105, updated on 11-Sep-2024

Summary

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Official Symbol
lncRNA:CR43406provided by FlyBase
Official Full Name
long non-coding RNA:CR43406provided by FlyBase
Primary source
FLYBASE:FBgn0263325
Locus tag
Dmel_CR43406
See related
AllianceGenome:FB:FBgn0263325
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG43406; CR43406; Dmel\CR43406; mdcds_4120; mdcds_4123
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Genomic context

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See lncRNA:CR43406 in Genome Data Viewer
Location:
36F1-36F1; 2-53 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (18251381..18252697)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR43413 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR43408 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_033779.5 Chromosome 2L Reference Release 6 plus ISO1 MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
  2. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  3. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • lncRNA:CR43406-RC; Dmel\lncRNA:CR43406-RC; CR43406-RC; Dmel\CR43406-RC
  • lncRNA:CR43406-RD; Dmel\lncRNA:CR43406-RD; CR43406-RD; Dmel\CR43406-RD

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    18251381..18252697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_133089.1 RNA Sequence

    Status: REVIEWED

  2. NR_133088.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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