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LOC25491558 disease resistance protein RPV1 [ Medicago truncatula (barrel medic) ]

Gene ID: 25491558, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25491558
Gene description
disease resistance protein RPV1
Locus tag
MtrunA17_Chr4g0009001
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25491558 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (7021471..7036425, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (6528683..6537429, complement)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RUN1-like Neighboring gene disease resistance protein RPP4 Neighboring gene protein PHLOEM PROTEIN 2-LIKE A8 Neighboring gene TMV resistance protein N-like Neighboring gene disease resistance protein RPV1-like Neighboring gene disease resistance protein CHL1-like Neighboring gene disease resistance protein RPV1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
disease resistance protein RPV1
Names
disease resistance protein (TIR-NBS-LRR class)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    7021471..7036425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024781219.2 → XP_024636987.2  disease resistance protein RPV1

    UniProtKB/TrEMBL
    A0A072UHU5
    Conserved Domains (2) summary
    PLN03210
    Location:17 → 844
    PLN03210; Resistant to P. syringae 6; Provisional
    sd00033
    Location:574 → 593
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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