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atg1803 WD repeat-containing protein Atg1803 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543338, updated on 18-Sep-2024

Summary

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Official Symbol
atg1803
Official Full Name
WD repeat-containing protein Atg1803
Primary source
PomBase:SPAC458.06
Locus tag
SPOM_SPAC458.06
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
atg18; atg18c
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Genomic context

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See atg1803 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003424.3 (4742859..4744346)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene phosphatidylinositol 3-kinase Pik3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transcription factor TFIIE subunit Tfa1 Neighboring gene ncRNA Neighboring gene MAP kinase-interacting protein Sin1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Autophagy-deficient Schizosaccharomyces pombe mutants undergo partial sporulation during nitrogen starvation. Mukaiyama H, et al. Microbiology (Reading), 2009 Dec. PMID 19778961
  2. Global analysis of fission yeast mating genes reveals new autophagy factors. Sun LL, et al. PLoS Genet, 2013. PMID 23950735, Free PMC Article
  3. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article
  4. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables phosphatidylinositol-3,5-bisphosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphatidylinositol-3-phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in autophagy of mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in autophagy of peroxisome IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in glycophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in macroautophagy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in nucleophagy IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein lipidation involved in autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein localization to phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus HDA PubMed 
is_active_in cytoplasm HDA PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in fungal-type vacuole ISO
Inferred from Sequence Orthology
more info
  
is_active_in phagophore assembly site IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in phagophore assembly site membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
WD repeat-containing protein Atg1803

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4742859..4744346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020128.3 → NP_594700.1  WD repeat-containing protein Atg1803 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594700.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9P3W2
    Conserved Domains (3) summary
    COG2319
    Location:2 → 261
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:179 → 220
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:172 → 249
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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