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msh1 mismatch repair ATPase msh1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542833, updated on 18-Sep-2024

Summary

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Official Symbol
msh1
Official Full Name
mismatch repair ATPase msh1
Primary source
PomBase:SPAC13F5.01c
Locus tag
SPOM_SPAC13F5.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC23C11.18c
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Genomic context

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See msh1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (2169036..2172147, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Polo kinase Plo1 Neighboring gene ncRNA Neighboring gene putative potassium ion transporter Mdm28 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transcription factor TFIID complex subunit Taf7 Neighboring gene ncRNA Neighboring gene glycerol dehydrogenase Gld1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity. McDonald KR, et al. PLoS Genet, 2016 Sep. PMID 27611590, Free PMC Article
  2. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  3. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables ATP hydrolysis activity IC
Inferred by Curator
more info
  
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
  
enables double-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mismatched DNA binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in mismatch repair ISM
Inferred from Sequence Model
more info
  
involved_in mitochondrial DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrial chromosome IC
Inferred by Curator
more info
  
is_active_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
mismatch repair ATPase msh1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2169036..2172147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019080.4 → NP_593649.2  mismatch repair ATPase msh1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593649.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13700, O13921, Q9USD9
    Conserved Domains (6) summary
    COG0249
    Location:55 → 941
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam00488
    Location:696 → 934
    MutS_V; MutS domain V
    pfam01624
    Location:72 → 176
    MutS_I; MutS domain I
    pfam05188
    Location:217 → 332
    MutS_II; MutS domain II
    pfam05192
    Location:348 → 459
    MutS_III; MutS domain III
    cl17822
    Location:552 → 648
    MutS_III; MutS domain III
Nucleotide Protein
Heading Accession and Version

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